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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTCATCTGATGGAAAATATTGAAGCCAAGAATTTGCTGCACAGGGCTTTTAGTGTATTTTTATTCAACTCGAAGTATGAGTTGCTTCTCCAGgtatgtacatatgcttgctttgaagtctagataagtcaagtgctgtatacaaatggatcacaggcgtgtgactgggcatggctatgtcatatctagaatc...

Basic information

species Arabidopsis thaliana
transcript AT3G02780.1
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT3G02780.1 (Arabidopsis thaliana), 5'ss of exon 3
lower sequence: GLYMA09G38550.1 (Glycine max), 5'ss of exon 3
GTCATCTGATGGAAAATATTGAAGCCAAGAATTTGCTGCACAGGGCTTTTAGTGTATTTTTATTCAACTCGAAGTATGAGTTGCTTCTCCAGgtatgtacatatgct--tgctttgaagtctagataagtcaagtgctgtatacaaatggatcacaggcgtgtgactgggcatggctatgtcat-atctagaatc--
||||  |||||||||| ||||||||  ||||||||||||| || ||||| ||||||||  | |||||||| ||||||||||||||||| |||||| ||   |    |  |  |||   | |   ||||| |   ||  || ||||  | | |   |  |||    ||    ||  | |   ||| |  || | |   
GTCACTTGATGGAAAAGATTGAAGCTGAGAATTTGCTGCATAGAGCTTTCAGTGTATTCCTGTTCAACTCAAAGTATGAGTTGCTTCTTCAGgtaagtttcttcattgatatttttttgacctcataagcc---tgtagtttacatcttgttttaa--cgtaaacctatttatttcaaaagcatcaagtaaacttgg

upper sequence: AT3G02780.1 (Arabidopsis thaliana), 5'ss of exon 3
lower sequence: GLYMA18G47770.1 (Glycine max), 5'ss of exon 3
GTCATCTGATGGAAAATATTGAAGCCAAGAATTTGCTGCACAGGGCTTTTAGTGTATTTTTATTCAACTCGAAGTATGAGTTGCTTCTCCAGgtatgtacatatgct--tgctttgaagtctagataagtcaagtgctgtatacaaatggatcacaggcgtgtgactgggcatggctatgtcat-atctagaatc
 |||  |||||||||| ||||||||  ||||||||||||| || ||||| ||||||||  | |||||||| ||||||||||||||||| |||||| ||   |  | |  |  |||   | ||  || |      ||  || ||||  | | |   |   ||    ||    ||  | |   ||| |  || | | 
-TCACTTGATGGAAAAGATTGAAGCTGAGAATTTGCTGCATAGAGCTTTCAGTGTATTCCTGTTCAACTCTAAGTATGAGTTGCTTCTTCAGGtaagtttcttcgttgatatttttttggcttcatcataagcctgtagtttacatcttgttttaa--tgtaaacctattgatttcaaaagcatcaagtaaactt

upper sequence: AT3G02780.1 (Arabidopsis thaliana), 5'ss of exon 3
lower sequence: Vv04s0023g00600.t01 (Vitis vinifera), 5'ss of exon 3
GTCATCTGATGGAAAATATTGAAGCCAAGAATTTGCTGCACAGGGCTTTTAGTGTATTTTTATTCAACTCGAAGTATGAGTTGCTTCTCCAGgtatgtacatatgcttgctttgaagtctagataagtcaagtgctgtatacaaatggatcacaggcgtgtgactgggcatggctatgtcat-----atctagaatc-
||||| |||||||||| |||||| |  |||||||||||||||| ||||| ||||||||| | || |||||||| | ||| || || || |||||||||   |    ||  |  |||||   || ||||    |||| |  |      |    ||    ||  ||| | |  |||| |    |     || ||   || 
GTCATTTGATGGAAAAGATTGAATCTGAGAATTTGCTGCACAGAGCTTTCAGTGTATTTCTGTTTAACTCGAAATTTGAATTACTCCTTCAGgtatgtggttgaattt--tgggaagt---gacaagtttcctgct-tgcatggtgtgggtgcaaatatggaacttgacgaggctgttcagtggttcatttattgtca

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|47828035|gb|CK117719.1|CK117719
EST:     GGGCTTTTAGTGTATTTTTATTCAACTCGAAGTATGAGTTGCTTCTCCAG                         CAAAGGTCAAACACAAAGGTTACGTTCCCTCTAGTGTGGACTAACACTTGT
genomic: GGGCTTTTAGTGTATTTTTATTCAACTCGAAGTATGAGTTGCTTCTCCAGgtatgtacat ... gtttgaacagCAAAGGTCAAACACAAAGGTTACGTTCCCTCTAGTGTGGACTAACACTTGT
EST: gi|116477195|gb|EG519787.1|EG519787
EST:     GGGCTTTTAGTGTATTTTTATTCAACTCGAAGTATGAGTTGCTTCTCCAG                         CAAAGGTCAAACACAAAGGTTACGTTCCCTCTAGTGTGGACTAACACTTGT
genomic: GGGCTTTTAGTGTATTTTTATTCAACTCGAAGTATGAGTTGCTTCTCCAGgtatgtacat ... gtttgaacagCAAAGGTCAAACACAAAGGTTACGTTCCCTCTAGTGTGGACTAACACTTGT
EST: gi|116387556|gb|EG430148.1|EG430148
EST:     GGCTTTTAGTGTATTTTTATTCAACTCGAAGTATGAGTTGC-TCTTCCAG                         CAAAGGTCAAACACAAAGG-TACGTTTCCCTCTAGTGTGGACTAACACTT
genomic: GGCTTTTAGTGTATTTTTATTCAACTCGAAGTATGAGTTGCTTC-TCCAGgtatgtacat ... gtttgaacagCAAAGGTCAAACACAAAGGTTACG-TTCCCTCTAGTGTGGACTAACACTT
EST: gi|125211187|gb|EL226141.1|EL226141
EST:     AGTGTATTTTTATTCAACTCGAAGTATGAGTTGCTTCTCCAG                         CAAAGGTCAAACACAAAGGTTACGTTCCCTCTAGTGTGGACTAACACTTGT
genomic: AGTGTATTTTTATTCAACTCGAAGTATGAGTTGCTTCTCCAGgtatgtacat ... gtttgaacagCAAAGGTCAAACACAAAGGTTACGTTCCCTCTAGTGTGGACTAACACTTGT
EST: gi|116477196|gb|EG519788.1|EG519788
EST:     GGGCTTTTAGTGTATTTTTATTCAACTCGAAGTATGAGTTGCTTCTCCAG                         CAAAGGTCAAACACAAAGGTTACGTTCCCTCTAGTGTGGACTAACACTTGT
genomic: GGGCTTTTAGTGTATTTTTATTCAACTCGAAGTATGAGTTGCTTCTCCAGgtatgtacat ... gtttgaacagCAAAGGTCAAACACAAAGGTTACGTTCCCTCTAGTGTGGACTAACACTTGT