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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AGATGGTTTAAAGCTTCCAGAGTCTTTTAGTCAACTGGTTTCGGATATGAAGAACAACCACTATGATGCTAAAACATTTGCCCTCGTATTTCGAGCTATGgtacattctctaatcttcaataaaagcttaaattgtagattgatccgaaacttatatttgatttgattactctttttgaacag

Basic information

species Arabidopsis thaliana
transcript AT3G01040.2
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT3G01040.2 (Arabidopsis thaliana), 5'ss of exon 3
lower sequence: GLYMA08G26480.1 (Glycine max), 5'ss of exon 3
AGATGGTTTAAAGCTTCCAGAGTCTTTTAGTCAACTGGTTTCGGATATGAAGAACAACCACTATGATGCTAAAACATTTGCCCTCGTATTTCGAGCTATGgtacattctctaatct--tcaata-aaagcttaaattgtagattgatccgaaacttatatttgatttg--attactctttttgaacag---------------
|  || | ||||||| || || ||||||  |||||||||||| |||||||||||||| || |||||||| ||||| |||||  || |  |  | |  ||||||  ||   |  |    | || | ||||  |    ||||  ||| |    || | |||||   |  |  |    |  | |  ||| |               
ACCTGATCTAAAGCTGCCGGATTCTTTTGATCAACTGGTTTCTGATATGAAGAACAATCAGTATGATGCAAAAACTTTTGCATTCATGCTAAGGGGAATGgtaagttgcttgtttcagttaacacaaagtgttgtctgtatcttggtt---aattaatattgagtaaggaagaggttgtctcaaactgaattctattgacatt

upper sequence: AT3G01040.2 (Arabidopsis thaliana), 5'ss of exon 3
lower sequence: GLYMA18G49960.1 (Glycine max), 5'ss of exon 3
AGATGGTTTAAAGCTTCCAGAGTCTTTTAGTCAACTGGTTTCGGATATGAAGAACAACCACTATGATGCTAAAACATTTGCCCTCGTATTTCGAGCTATGgtacattctctaatc--ttcaata-aaagcttaaattgtagattgatccgaaacttatatttgatttg--attactctttttgaacag---------------
   || | ||||||| || || ||||||  |||||||||||| |||||||||||||| || |||||||| ||||| |||||  || |  |  | |  ||||||  ||   |  |   || || |  |||  |    |||   ||| |    || | |||||   |  |  |    | || |  |||                 
TCCTGATCTAAAGCTGCCGGATTCTTTTGATCAACTGGTTTCTGATATGAAGAACAATCAGTATGATGCAAAAACTTTTGCATTCATGCTAAGGGGAATGgtaagttgcttgtttcatttaacacgaagtgttgtctgtttcttggtt---aattgatattgagtaaggaaaaggttttctcaaactaaattctattgacatt

upper sequence: AT3G01040.2 (Arabidopsis thaliana), 5'ss of exon 3
lower sequence: GLYMA13G05950.1 (Glycine max), 5'ss of exon 3
AGATGGTTTAAAGCTTCCAGAGTCTTTTAGTCAACTGGTTTCGGATATGAAGAACAACCACTATGATGCTAAAACATTTGCCCTCGTATTTCGAGCTATGgtacattctctaat---cttcaataaaagcttaa-attgtaga-ttgatccgaaacttatatttgatttgattactctt--tttgaacag----------
|  || | || |||| ||||| || |||  |||||||||||| |||||||||||||| || |||||||| ||||| |||||  || | ||  | |  ||||||  ||   |  |   | |  |||||   | |  ||  |  | || ||    || |  ||||   |  |  |  |||    |||||             
ATCTGCTCTAGAGCTGCCAGATTCATTTGATCAACTGGTTTCTGATATGAAGAACAATCAATATGATGCGAAAACGTTTGCATTCATGTTAAGGGGAATGgtaagtttcttgttacgcctgcataaagtatcactatcatgaacttcattattaattggtattaagtaaggattgtctgaaattgaattctgttgatgtt

upper sequence: AT3G01040.2 (Arabidopsis thaliana), 5'ss of exon 3
lower sequence: GLYMA19G03460.1 (Glycine max), 5'ss of exon 3
AGATGGTTTAAAGCTTCCAGAGTCTTTTAGTCAACTGGTTTCGGATATGAAGAACAACCACTATGATGCTAAAACATTTGCCCTCGTATTTCGAGCTATGgtacattctctaat---cttcaataaa--agcttaaa-----ttgtagattgatccgaaacttatatttgatt---tga--ttactctttttgaacag--
|  || | || ||||||| || || |||  |||||||||||| |||||||||| ||| || |||||||| ||||| |||||  || | ||  | |  ||||||  || | |  |   |||  |||||  | | | ||     || |  |||| |   ||    | |   ||||   |||  ||    | | |  |     
ATCTGCTCTAGAGCTTCCGGATTCATTTGATCAACTGGTTTCTGATATGAAGAGCAATCAATATGATGCGAAAACGTTTGCATTCATGTTAAGGGGAATGgtaagttttttgttgtgcttgcataaagtatcatgaacttctttattaattggtattaagtagagaaaggattgtctgaagttgaattctgttgatgttt

upper sequence: AT3G01040.2 (Arabidopsis thaliana), 5'ss of exon 3
lower sequence: Vv14s0108g01520.t01 (Vitis vinifera), 5'ss of exon 3
AGATGGTTTAAAGCTTCCAGAGTCTTTTAGTCAACTGGTTTCGGATATGAAGAACAACCACTATGATGCTAAAACATTTGCCCTCGTATTTCGAGCTATGgtacattctctaat-cttcaataaaagct-taaattgtagattgatccgaa----acttatatttgatttgattactctttttgaacag-----------
||||||| |||||||||||||  | || |||||||| ||||| || ||||||||||| || |||||||| || ||||||||  || | || || || ||||||| ||   || | |  ||  | |   | ||  ||||  ||   |  | |      || |  |  |  | | |    || || ||  |           
AGATGGTCTAAAGCTTCCAGATACATTCAGTCAACTTGTTTCTGAAATGAAGAACAAACAGTATGATGCAAAGACATTTGCTTTCATGTTACGGGCAATGgtacgtttcatattaccacagcacatattatattttgtttatctttttggatgaggtttgtcctgaaagttagtgtctttgtttaatggcttatacttta

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|116476805|gb|EG519397.1|EG519397
EST:     AGAACAACCACTATGATGCTAAAACATTTGCCCTCGTATTTCGAGCTATG                         GTAGAGAAGCTTGAAAGGGATTTAAGGGAATCCAAATTTGCAGAACTCATG
genomic: AGAACAACCACTATGATGCTAAAACATTTGCCCTCGTATTTCGAGCTATGgtacattctc ... ttttgaacagGTAGAGAAGTTTGAAAGGGATTTAAGGGAATCCAAATTTGCAGAACTCATG