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TATTTCTTGCTCAAGTGGTCTACCTTGTCATTTGGGCTGCTCTAGGTCAAGACTGGGATACACCAGATACTGGCTGGATGAGAGTTATTGGCTTTATGATgtaagagtactctcatcatttcattcatcttcctgccttacaaatatttacttgttagttgatactctcgtctttgcttctgcag
species | Arabidopsis thaliana |
transcript | AT2G48060.1 |
intron # | 3 |
splice site | 5' |
intron type | U2 |
EST: GACTGGGATACACCAGATACTGGCTGGATGAGAGTTATTGGCTTTATGAT ATTAAAGTCTTGGAGAAACCCCACCGTTATGTATTTCCTGGCTTTACAACTEST: gi|116402648|gb|EG445240.1|EG445240
genomic: GACTGGGATACACCAGATACTGGCTGGATGAGAGTTATTGGCTTTATGATgtaagagtac ... gcttctgcagATTAAAGTCTTGGAGAAACCCCACCGTTATGTATTTCCTGGCTTTACAACT
EST: GACTGGGATACACCAGATACTGGCTGGATGAGAGTTATTGGCTTTATGAT ATTAAAGTCTTGGAGAAACCCCACCGTTATGTATTTCCTGGCTTTACAACTEST: gi|116402577|gb|EG445169.1|EG445169
genomic: GACTGGGATACACCAGATACTGGCTGGATGAGAGTTATTGGCTTTATGATgtaagagtac ... gcttctgcagATTAAAGTCTTGGAGAAACCCCACCGTTATGTATTTCCTGGCTTTACAACT
EST: GACTGGGATACACCAGATACTGGCTGGATGAGAGTTATTGGCTTTATGAT ATTAAAGTCTTGGAGAAACCCCACCGTTATGTATTTCCTGGCTTTACAACTEST: gi|116439811|gb|EG482403.1|EG482403
genomic: GACTGGGATACACCAGATACTGGCTGGATGAGAGTTATTGGCTTTATGATgtaagagtac ... gcttctgcagATTAAAGTCTTGGAGAAACCCCACCGTTATGTATTTCCTGGCTTTACAACT
EST: GACTGGGATACACCAGATACTGGCTGGATGAGAGTTATTGGCTTTATGAT ATTAAAGTCTTGGAGAAACCCCACCGTTATGTATTTCCTGGCTTTACAACTEST: gi|116402646|gb|EG445238.1|EG445238
genomic: GACTGGGATACACCAGATACTGGCTGGATGAGAGTTATTGGCTTTATGATgtaagagtac ... gcttctgcagATTAAAGTCTTGGAGAAACCCCACCGTTATGTATTTCCTGGCTTTACAACT
EST: GACTGGGATACACCAGATACTGGCTGGATGAGAGCTATTGGCTTTATGAT ATTAAAGTCTTGGAGAAACCCCACCGTTATGTATTTCCTGGCTEST: gi|116402647|gb|EG445239.1|EG445239
genomic: GACTGGGATACACCAGATACTGGCTGGATGAGAGTTATTGGCTTTATGATgtaagagtac ... gcttctgcagATTAAAGTCTTGGAGAAACCCCACCGTTATGTATTTCCTGGCT
EST: GACTGGGATACACCAGATACTGGCTGGATGAGAGCTATTGGCTTTATGAT ATTAAAGTCTTGGAGAAACCCCACCGTTATGTATT-CCTGGCT
genomic: GACTGGGATACACCAGATACTGGCTGGATGAGAGTTATTGGCTTTATGATgtaagagtac ... gcttctgcagATTAAAGTCTTGGAGAAACCCCACCGTTATGTATTTCCTGGCT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TATTTCTTGCTCAAGTGGTCTACCTTGTCATTTGGGCTGCTCTAGGTCAAGACTGGGATACACCAGATACTGGCTGGATGAGAGTTATTGGCTTTATGATgtaagagtactctcatcatttcattcatcttcctgccttacaaatatttacttgttagttgatactctcgtctttgcttctgcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGGA