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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTTATGGAATGGAGTGTAGCGACTCCATGAAAGgtttttcattattcttcttccttccaatttatgattcacatgcacaatagtaatgcattagatctaacaaatctccaaaaatatggattttttgtttctc...

Basic information

species Arabidopsis thaliana
transcript AT2G47630.1
intron # 3
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|86040706|gb|DR336461.1|DR336461
EST:     GTTATGGAATGGAGTGTAGCR-CATCCATGAAAG                         AATGCGGAATCAGGCTGGCTTCAGCTGGATACGCGGTTTTTGGTATGGACT
genomic: GTTATGGAATGGAGTGTAGCGAC-TCCATGAAAGgtttttcatt ... ttgattttagAATGCGGAATCAGGCTGGCTTCAGCTGGATACGCGGTTTTTGGTATGGACT
EST: gi|86040705|gb|DR336460.1|DR336460
EST:     GTTATGGAATGGAGTGTAGCGACTCCATGAAAG                         AATGCGGAATCAGGCTGGCTTCAGCTGGATACGCGGTTTTTGGTATGGACT
genomic: GTTATGGAATGGAGTGTAGCGACTCCATGAAAGgtttttcatt ... ttgattttagAATGCGGAATCAGGCTGGCTTCAGCTGGATACGCGGTTTTTGGTATGGACT
EST: gi|86040708|gb|DR336463.1|DR336463
EST:     GTTATGGAATGGAGTGTAGCGACTCCATGAAAG                         AATGCGGAATCAGGCTGGCTTCAGCTGGATACGCGGTTTTTGGTATGGACT
genomic: GTTATGGAATGGAGTGTAGCGACTCCATGAAAGgtttttcatt ... ttgattttagAATGCGGAATCAGGCTGGCTTCAGCTGGATACGCGGTTTTTGGTATGGACT
EST: gi|86040701|gb|DR336456.1|DR336456
EST:     GTTATGGAATGGAGTGTAGCGACTCCATGAAAG                         AATGCGGAATCAGGCTGGCTTCAGCTGGATACGCGGTTTTTGGTATGGACT
genomic: GTTATGGAATGGAGTGTAGCGACTCCATGAAAGgtttttcatt ... ttgattttagAATGCGGAATCAGGCTGGCTTCAGCTGGATACGCGGTTTTTGGTATGGACT
EST: gi|86040707|gb|DR336462.1|DR336462
EST:     GTTATGGAATGGAGTGTAGCGACTTCCATGAAAG                         AATGCGGAATCAGGCTGGCTTCAGCTGGATACGCGGTTTTTGGTATGGACT
genomic: GTTATGGAATGGAGTGTAGCGAC-TCCATGAAAGgtttttcatt ... ttgattttagAATGCGGAATCAGGCTGGCTTCAGCTGGATACGCGGTTTTTGGTATGGACT
EST: gi|86040702|gb|DR336457.1|DR336457
EST:     GTTATGGAATGGAGTGTAGCGACTTCCATGAAAG                         AATGCGGAATCAGGCTGGCTTCAGCTGGATACGCGGTTTTTGGTATGGACT
genomic: GTTATGGAATGGAGTGTAGCGAC-TCCATGAAAGgtttttcatt ... ttgattttagAATGCGGAATCAGGCTGGCTTCAGCTGGATACGCGGTTTTTGGTATGGACT

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
GTTATGGAATGGAGTGTAGCGACTCCATGAAAGgtttttcattattcttcttccttccaatttatgattcacatgcacaatagtaatgcattagatctaacaaatctccaaaaatatggattttttgtttctc

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -cttcttcc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ctaacaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aaaaata