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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AAATCCAGACAACGGCAAAGAAGAGCATGTCCGTAGACAGTTGAACTGTGGTGTGGTACCACGTGGAATTGATGTTCATTGCTTGGCGGGTTTAATAAAGgttgaaaaaggaaagatttaaattagtttctataacattttaagttcaaaaggtttgatgtttgctgttgttgaatttcggattaaattag

Basic information

species Arabidopsis thaliana
transcript AT2G46710.1
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT2G46710.1 (Arabidopsis thaliana), 5'ss of exon 3
lower sequence: GLYMA03G42090.1 (Glycine max), 5'ss of exon 3
AAATCCAGACAACGGCAAAGAAGAGCATGTCCGTAGACAGTTGAACTGTGGTGTGGTACCACGTGGAATTGATGTTCATTGCTTGGCGGGTTTAATAAAGgttgaaaaagga-----aagatttaaattagtttcta-taacattttaagttcaaaaggt-ttgatgtttgctgttgttgaatttcggattaaattag--
 ||| | || ||| || |||||||   ||| |||   ||| | ||| | ||| ||||||||| ||||||||| |||||||| ||  | ||||||||||||||  | |    |     ||   |||| ||| ||| |  ||  ||  |    | || |  | ||   |||   ||   |  | |||    ||   |||   
TAATGCTGATAACAGCCAAGAAGAATTTGTGCGTGATCAGCTAAACAGAGGTCTGGTACCACTTGGAATTGACGTTCATTGTTTATCTGGTTTAATAAAGgtatatactaaattcttaattcttaatttatttttttctattatgcttgacttaacatatattagggttaattggaatctacttttatttttgcttaaca

upper sequence: AT2G46710.1 (Arabidopsis thaliana), 5'ss of exon 3
lower sequence: Vv15s0048g02830.t01 (Vitis vinifera), 5'ss of exon 4
AAATCCAGACAACGGCAAAGAAGAGCATGTCCGTAGACAGTTGAACTGTGGTGTGGTACCACGTGGAATTGATGTTCATTGCTTGGCGGGTTTAATAAAGgttgaaaaaggaaagatttaaattagtttctataacattttaag--ttcaaaaggtttgatgtttgctgttg-ttgaatttcggattaaattag------
|||| | || || ||  |||||||| ||||||| |  ||| | |||   ||  |  | || |||||||||||||||||||| ||||| || || ||||||||   | |   ||    |||  |||  |   | || |  | ||   ||  |||| ||   | || | || || |  | |  | | ||  |  |       
AAATGCTGAGAATGGGCAAGAAGAGTATGTCCGGAATCAGCTAAACAAGGGGCTCTTGCCTCGTGGAATTGATGTTCATTGTTTGGCAGGGTTGATAAAGgtaatacacataatatgttagcttacctatcagaaaaaatgaaaaattataaagattatgtcttagttgatgatccagtcactgcttgcaagaacacgct
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|164098160|gb|ES181810.1|ES181810
EST:     GTGTGGTACCACGTGGAATTGATGTTCATTGCTTGGCGGGTTTAATAAAG                         GCGTGGTTCAGGGAGCTACCTACAGGAGTGCTTGATGTGTTGACAC
genomic: GTGTGGTACCACGTGGAATTGATGTTCATTGCTTGGCGGGTTTAATAAAGgttgaaaaag ... attaaattagGCGTGGTTCAGGGAGCTACCTACAGGAGTGCTTGATGTGTTGACAC