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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGAGAATTTGGAGAATCCAAAACTTTACCACTACGCTCTCTTCTCTGATAATGTACTGGCTGCATCAGTTGTTGTCAACTCCACAGTCATGAATGCACAGgtaatgatcaatccctagtaattgttgcaagaataagtgctttaaacttacaaggcctactgggtttatttggcag

Basic information

species Arabidopsis thaliana
transcript AT2G46480.1
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT2G46480.1 (Arabidopsis thaliana), 5'ss of exon 3
lower sequence: GRMZM2G076276_T03 (Zea mays), 5'ss of exon 7
GGAGAATTTGGAGAATCCAAAACTTTACCACTACGCTCTCTTCTCTGATAATGTACTGGCTGCATCAGTTGTTGTCAACTCCACAGTCATGAATGCACAGgtaatgatcaatccctagtaattgttgcaagaataagtgctttaaacttacaaggcctactgggtttatttggcag-------------------------------
 ||||| ||||| |||||  | |||||||| || ||||| ||||| ||||||||  |||| ||||||||||| |||||||| ||  ||||||||||  |||| |   | |  |||   |      || |||  |||   ||| |   |  | |    |    |    |||    ||                               
CGAGAACTTGGAAAATCCTGATCTTTACCATTATGCTCTTTTCTCAGATAATGTTTTGGCAGCATCAGTTGTGGTCAACTCAACCATCATGAATGCGAAGgttagtgtaatccccatcttgaaactggaagtgtaatctcttcattatgtctaccattgaatgacccattatatagcacttttgattttctttctataaattttcag

upper sequence: AT2G46480.1 (Arabidopsis thaliana), 5'ss of exon 3
lower sequence: GRMZM2G147145_T02 (Zea mays), 5'ss of exon 4
GGAGAATTTGGAGAATCCAAAACTTTACCACTACGCTCTCTTCTCTGATAATGTACTGGCTGCATCAGTTGTTGTCAACTCCACAGTCATGAATGCACAGgtaatgatcaatccctagtaattgttgcaagaataagtgctttaa-acttacaaggcctactgggt--ttatttggcag----------------------------
 |||||  |||| |||||  | |||||||| || ||||| ||||| || |||||  |||| ||||||||||| |||||||| ||  ||||||||||  |||| | | | ||| | |  | |  | || ||  || |   ||| |    ||  |      |||||    |||| |  ||                             
TGAGAACCTGGAAAATCCTGATCTTTACCATTATGCTCTTTTCTCGGACAATGTTTTGGCAGCATCAGTTGTGGTCAACTCAACCATCATGAATGCTAAGgtta-gtttaatgcatcttcaa-gctggaaatatgatctcttcattgtttgtaccattgactggtcaattatattacactcttatttttcttgctataaatttgcag