1 5' 3' | 2 5' 3' | 3 5' 3' |
ATGTGATACTTGCCGACTTGGAAAAAGAGAAGAAAACGTCATTCATCAAAGCATGGGAAGAGAGTGAGAAGTCAAAGGCTGAGAACAGgtaaactttcatcatcttctcacccaaagattactattgcttacagatctctgatgatcttgaaatggacag
species | Arabidopsis thaliana |
transcript | AT2G45820.1 |
intron # | 3 |
splice site | 5' |
intron type | U2 |
EST: AAGTCAAAGGCTGAGAGCAG GGCACAAAAGAAGATCTCTGATGTGCATGCTTGGGAAAATAGCAAGAAAGCEST: gi|86066947|gb|DR362704.1|DR362704
genomic: AAGTCAAAGGCTGAGAACAGgtaaactttc ... aaatggacagGGCACAAAAGAAGATCTCTGATGTGCATGCTTGGGAAAATAGCAAGAAAGC
EST: ATTCATCAAAGCATGGGAAGAAGAAGTGAGAAGTCAAAGGCTGAGAACAG GGCACAAAAAGAAGAATCTCTGATGTGCATGCTTGGGAAAATAGCAAGGAAEST: gi|86060966|gb|DR356723.1|DR356723
genomic: ATTCATCAAAGCATGGGAAGA-GA-GTGAGAAGTCAAAGGCTGAGAACAGgtaaactttc ... aaatggacagGGCACAAAA-GAAGA-TCTCTGATGTGCATGCTTGGGAAAATAGCAAG-AA
EST: TCATTCATCAAAGCATGGGAAGAGAGTGAGAAGTCAAAGGCTGAGAACAG GGCACAAAAGAAGATCTCTGATGTGCATGCTTGGGAAAATAGMAAGAAAGCEST: gi|125238325|gb|EL252410.1|EL252410
genomic: TCATTCATCAAAGCATGGGAAGAGAGTGAGAAGTCAAAGGCTGAGAACAGgtaaactttc ... aaatggacagGGCACAAAAGAAGATCTCTGATGTGCATGCTTGGGAAAATAGCAAGAAAGC
EST: AGAGTGAGAAGTCAAAGGCTGAGAACAG GGCACAAAAGAAGATCTCTGATGTGCATGCTTGGGAAAATAGCAAGAAAGEST: gi|124949926|gb|EL025433.1|EL025433
genomic: AGAGTGAGAAGTCAAAGGCTGAGAACAGgtaaactttc ... aaatggacagGGCACAAAAGAAGATCTCTGATGTGCATGCTTGGGAAAATAGCAAGAAAG
EST: AGTGAGAAGTCAAAGGCTGAGAACAG GGCACAAAAGAAGATCTCTGATGTGCATGCTTGGGAAAATAGCAAGAAAGCEST: gi|124850978|gb|EH935415.1|EH935415
genomic: AGTGAGAAGTCAAAGGCTGAGAACAGgtaaactttc ... aaatggacagGGCACAAAAGAAGATCTCTGATGTGCATGCTTGGGAAAATAGCAAGAAAGC
EST: TCATTCATCAAAGCATGGGAAGAGAGTGAGAAGTCAAAGGCTGAGAACAG GGCACAAAAGAAGATCTCTGATGTGCATG
genomic: TCATTCATCAAAGCATGGGAAGAGAGTGAGAAGTCAAAGGCTGAGAACAGgtaaactttc ... aaatggacagGGCACAAAAGAAGATCTCTGATGTGCATG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ATGTGATACTTGCCGACTTGGAAAAAGAGAAGAAAACGTCATTCATCAAAGCATGGGAAGAGAGTGAGAAGTCAAAGGCTGAGAACAGgtaaactttcatcatcttctcacccaaagattactattgcttacagatctctgatgatcttgaaatggacag
- - - - - - - - - - - - - - - - - - - - - - - - - - - GGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGT