1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' |
GCAGAATTGCTTGTCCAATATGGAGGCGTCGCTCCTAAACAGGCTGAAGAAGCACACTCCCGAGTTATCGATAAGgtaatatagactattcatcgttacaaagcattgcatgactcgataactctcaagtatctagattcagtctttgttcacaattggtccagattcttcattttgccctgagatgtgcatatttttaggccggtggggtttaatgctaacggcacacaaaaatgttgattcatcggttgcag
species | Arabidopsis thaliana |
transcript | AT2G45270.1 |
intron # | 3 |
splice site | 5' |
intron type | U2 |
EST: AGAAGCACACTCCCGAGTTATCGATAAG GTTTGTGCAAGACGCGCTTGATAAAGCCAATTTGACCGAGAAGGATCTCTCEST: gi|125106592|gb|EL159981.1|EL159981
genomic: AGAAGCACACTCCCGAGTTATCGATAAGgtaatataga ... tcggttgcagG-TTGTGCAAGACGCGCTTGATAAAGCCAATTTGACCGAGAAGGATCTCTC
EST: AGAAGCACACTCCCGAGTTATCGATAAG GTTGTGCAAGAACGCGCTTGATAAAGCCAATTTGACCGAGAAGGATCTCTC
genomic: AGAAGCACACTCCCGAGTTATCGATAAGgtaatataga ... tcggttgcagGTTGTGCAAG-ACGCGCTTGATAAAGCCAATTTGACCGAGAAGGATCTCTC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GCAGAATTGCTTGTCCAATATGGAGGCGTCGCTCCTAAACAGGCTGAAGAAGCACACTCCCGAGTTATCGATAAGgtaatatagactattcatcgttacaaagcattgcatgactcgataactctcaagtatctagattcagtctttgttcacaattggtccagattcttcattttgccctgagatgtgcatatttttaggccggtggggtttaatgctaacggcacacaaaaatgttgattcatcggttgcag
- - - - - - - - - - - - - - - - - - - - - CTGAAG
- - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - AGAAGC