1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
GGATACAGCTGGGCAAGAGCGATTCAGGAGTCTAATTCCGAGCTATATCAGGGATTCCTCCGTTGCTGTTATTGTGTATGATGTTGCAAgtatgtgtaccttcactcgttctctcaaacacatgaatattttcccatatctgagatcttggggatgtggttttcagtaatcttatgaatttatgcgtttcgatttcttctttatgttgatccattgtgcgttgtgaaactcgagatttattttgttttccactgacatatag
species | Arabidopsis thaliana |
transcript | AT2G44610.1 |
intron # | 3 |
splice site | 5' |
intron type | U2 |
EST: GAGCTATATCAGGGATTCCTCCGTTGCTGTTATCGTGTATGATGTTGCAA GCAGGCAGTCCTTCCTAAACACTACTAAEST: gi|116467570|gb|EG510162.1|EG510162
genomic: GAGCTATATCAGGGATTCCTCCGTTGCTGTTATTGTGTATGATGTTGCAAgtatgtgtac ... tgacatatagGCAGGCAGTCCTTCCTAAACACTACTAA
EST: GAGCTATATCAGGGATTCCTCCGTTGCTGTTATTGTGTATGATGTTGCAA GCAGGCAGTCCTTCCTAAACACTACTAAGTGGATCGATGAGGTTAGGACAGEST: gi|124829919|gb|EH914485.1|EH914485
genomic: GAGCTATATCAGGGATTCCTCCGTTGCTGTTATTGTGTATGATGTTGCAAgtatgtgtac ... tgacatatagGCAGGCAGTCCTTCCTAAACACTACTAAGTGGATCGATGAGGTTAGGACAG
EST: ATTCCTCCGTTGCTGTTTATTGTGTATGATGTTGCAA GCAGGCAGTCCTTCCTAAACACTACTAAGTGGATCGATGAGGTTAGGACAGEST: gi|164190621|gb|ES125120.1|ES125120
genomic: ATTCCTCCGTTGCTG-TTATTGTGTATGATGTTGCAAgtatgtgtac ... tgacatatagGCAGGCAGTCCTTCCTAAACACTACTAAGTGGATCGATGAGGTTAGGACAG
EST: GGATTCCTCCGTTGCTGTTATTGTGTATGATGTTGCAA GCAGGCAGTCCTTCCTAAACACTGCTAAGTGGATCGATGAGGTTAGGACAG
genomic: GGATTCCTCCGTTGCTGTTATTGTGTATGATGTTGCAAgtatgtgtac ... tgacatatagGCAGGCAGTCCTTCCTAAACACTACTAAGTGGATCGATGAGGTTAGGACAG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GGATACAGCTGGGCAAGAGCGATTCAGGAGTCTAATTCCGAGCTATATCAGGGATTCCTCCGTTGCTGTTATTGTGTATGATGTTGCAAgtatgtgtaccttcactcgttctctcaaacacatgaatattttcccatatctgagatcttggggatgtggttttcagtaatcttatgaatttatgcgtttcgatttcttctttatgttgatccattgtgcgttgtgaaactcgagatttattttgttttccactgacatatag
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