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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AGGACAAAGCGTGTGGGATCATTTCTCCAACAGGTTTCCTCACAGAATCAGTGATTCTAGCGACGGAAACGTTGCCGTTGATTTCTACCATCGTTACAAGgtacttttcttctcttcttgttctgttttttttttcgatttcttacttgtcaaggtaatttagttacaagacttgaagatctgtgattgatttcttgtacag

Basic information

species Arabidopsis thaliana
transcript AT2G44490.1
intron # 3
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|125139354|gb|EL178169.1|EL178169
EST:     GTGATTCTAGCGACGGAAACGTTGCCGTTGATTTCTACCATCGTTACAAG                         GAAGATATTAAGAGAATGAA
genomic: GTGATTCTAGCGACGGAAACGTTGCCGTTGATTTCTACCATCGTTACAAGgtacttttct ... tcttgtacagGAAGATATTAAGAGAATGAA
EST: gi|125301473|gb|EL315558.1|EL315558
EST:     ATTCTAGCGACGGAAACGTTGCCGTTGATTTCTACCATCGTTACAAG                         GAAGATATTAAGAGAATGAAGGATATAAACATGGATTCGTTTCGGCTTTCC
genomic: ATTCTAGCGACGGAAACGTTGCCGTTGATTTCTACCATCGTTACAAGgtacttttct ... tcttgtacagGAAGATATTAAGAGAATGAAGGATATAAACATGGATTCGTTTCGGCTTTCC
EST: gi|124772192|gb|EH862321.1|EH862321
EST:     CCATCGTTACAAG                         GAAGATATTAAGAGAATGAAGGATATAAACATGGATTCGTTTCGGCTTTCC
genomic: CCATCGTTACAAGgtacttttct ... tcttgtacagGAAGATATTAAGAGAATGAAGGATATAAACATGGATTCGTTTCGGCTTTCC