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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GATAACGAGTTGATCCGATTGAAGCGGGAGGCTAAGTTGAAAGGAGGTTTCTACGTTGACCCTGAGGCTAAGTTGCTCTTTATCATTCGTATCCGTGGgtatgtgcctattatttgtgtgttacataagttgttgcatatagattctgttttttatttacgtgattgtttgtcatttgcag

Basic information

species Arabidopsis thaliana
transcript AT2G44120.1
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT2G44120.1 (Arabidopsis thaliana), 5'ss of exon 3
lower sequence: GLYMA07G02270.1 (Glycine max), 5'ss of exon 3
GATAACGAGTTGATCCGATTGAAGCGGGAGGCTAAGTTGAAAGGAGGTTTCTACGTTGACCCTGAGGCTAAGTTGCTCTTTATCATTCGTATCCGTGGgtatgtgcctattatttgtgtgttacataagttgttgcatatagattctgttttttatttacgtgattgtttgtcatttgcag
|| || || ||||| || ||||| || ||||| ||| ||||||| |||||||| || || || ||||||||| || | ||||| ||||| || ||||||||||||  | |  || |  ||      |  || | | ||||  ||  || | |  |  || || ||| |  ||  ||| |||
GAGAAGGAATTGATTCGGTTGAAACGCGAGGCCAAGCTGAAAGGTGGTTTCTATGTGGATCCAGAGGCTAAGCTGTTGTTTATTATTCGCATTCGTGGgtatgtgtttctacttagactg------agattttagaatattcatgttggtct--aactatgtaatt-tgggtttttttcag

upper sequence: AT2G44120.1 (Arabidopsis thaliana), 5'ss of exon 3
lower sequence: Vv00s2416g00010.t01 (Vitis vinifera), 5'ss of exon 1
--GATAACGAGTTGATCCGATTGAAGCGGGAGGCTAAGTTGAAAGGAGGTTTCTACGTTGACCCTGAGGCTAAGTTGCTCTTTATCATTCGTATCCGTGGgtatgtgccta--------ttatttgtgt-gttacataagttgttgcatatagattctgttttttatttacgtgattgtttgtcatttgcag
   | |  |||  ||| | ||||||||  ||||||||| |||| || || || |||||||| || |||| |||  | || ||||| |||||||||||||||||||  | |         ||||||   | | ||| |    | |   ||  | |||||| || | |||   ||     | ||  | || |||
AGCAAATGGAGCCGATTCAATTGAAGCATGAGGCTAAGCTGAAGGGTGGATTTTACGTTGATCCAGAGGTTAAACTTCTATTTATTATTCGTATCCGTGGgtatgcacttggactatagttatttccattgatacctttactttcatattaatattctggttctcattcctgtccac-tctggaactttcag

upper sequence: AT2G44120.1 (Arabidopsis thaliana), 5'ss of exon 3
lower sequence: Vv09s0054g00090.t01 (Vitis vinifera), 5'ss of exon 3
GATAACGAGTTGATCCGATTGAAGCGGGAGGCTAAGTTGAAAGGAGGTTTCTACGTTGACCCTGAGGCTAAGTTGCTCTTTATCATTCGTATCCGTGGgtatgtgccta--------ttatttgtgt-gttacataagttgttgcatatagattctgttttttatttacgtgattgtttgtcatttgcag---------
 | || ||| |||| | ||||||||  ||||||||| |||| || || || |||||||| || |||| |||  | || ||||| |||||||||||||||||||  | |         ||||||   | | ||| |    | |   ||  | |||||| || | |||   ||     | ||  | || |||         
CAAAAGGAGCTGATTCAATTGAAGCATGAGGCTAAGCTGAAGGGTGGATTTTACGTTGATCCAGAGGTTAAACTTCTATTTATTATTCGTATCCGTGGgtatgcacttggactatagttatttccattgatacctttactttcatattaatattctggttctcattcctgttcac-tctggaactttcagtatcaatgc

upper sequence: AT2G44120.1 (Arabidopsis thaliana), 5'ss of exon 3
lower sequence: Vv09s0054g00140.t01 (Vitis vinifera), 5'ss of exon 1
--GATAACGAGTTGATCCGATTGAAGCGGGAGGCTAAGTTGAAAGGAGGTTTCTACGTTGACCCTGAGGCTAAGTTGCTCTTTATCATTCGTATCCGTGGgtatgtgccta--------ttatttgtgt-gttacataagttgttgcatatagattctgttttttatttacgtgattgtttgtcatttgcag
   | |  |||  ||  | ||||||||  ||||||||| |||| || || || |||||||| || |||| |||  | || ||||| |||||||||||||||||||  | |         ||||||   | | ||| |    | |   ||  | |||||| || | |||   ||     | ||  | || |||
AGCAAATGGAGCCGACTCAATTGAAGCATGAGGCTAAGCTGAAGGGTGGATTTTACGTTGATCCAGAGGTTAAACTTCTATTTATTATTCGTATCCGTGGgtatgcacttggactatagttatttccattgatacctttactttcatattaatattctggttctcattcctgtccac-tctggaactttcag

upper sequence: AT2G44120.1 (Arabidopsis thaliana), 5'ss of exon 3
lower sequence: Vv09s0054g00190.t01 (Vitis vinifera), 5'ss of exon 2
GATAACGAGTTGATCCGATTGAAGCGGGAGGCTAAGTTGAAAGGAGGTTTCTACGTTGACCCTGAGGCTAAGTTGCTCTTTATCATTCGTATCCGTGGgtatgtgccta--------ttatttgtgt-gttacataagttgttgcatatagattctgttttttatttacgtgattgtttgtcatttgcag
 | |  |||  ||  | ||||||||  ||||||||| |||| || || || |||||||| || |||| |||  | || ||||| |||||||||||||||||||  | |         ||||||   | | ||| |    | |   ||  | |||||| || | |||   ||     | ||  | || |||
CAAATGGAGCCGACTCAATTGAAGCATGAGGCTAAGCTGAAGGGTGGATTTTACGTTGATCCAGAGGTTAAACTTCTATTTATTATTCGTATCCGTGGgtatgcacttggactatagttatttccattgatacctttactttcatattaatattctggttctcattcctgtccac-tctggaactttcag

upper sequence: AT2G44120.1 (Arabidopsis thaliana), 5'ss of exon 3
lower sequence: Vv09s0054g00210.t01 (Vitis vinifera), 5'ss of exon 3
GATAACGAGTTGATCCGATTGAAGCGGGAGGCTAAGTTGAAAGGAGGTTTCTACGTTGACCCTGAGGCTAAGTTGCTCTTTATCATTCGTATCCGTGGgtatgtgccta--------ttatttgtgt-gttacataagttgttgcatatagattctgttttttatttacgtgattgtttgtcatttgcag
 | || ||| |||| | ||||||||  ||||||||| |||| || || || |||||||| || |||| |||  | || ||||| |||||||||||||||||||  | |         ||||||   | | ||| |    | |   ||  | |||||| || | |||   ||     | ||  | || |||
CAAAAGGAGCTGATTCAATTGAAGCATGAGGCTAAGCTGAAGGGTGGATTTTACGTTGATCCAGAGGTTAAACTTCTATTTATTATTCGTATCCGTGGgtatgcacttggactatagttatttccattgatacctttactttcctattaatattctggttctcattcctgttcac-tctggaactttcag

upper sequence: AT2G44120.1 (Arabidopsis thaliana), 5'ss of exon 3
lower sequence: Vv00s2761g00010.t01 (Vitis vinifera), 5'ss of exon 1
--GATAACGAGTTGATCCGATTGAAGCGGGAGGCTAAGTTGAAAGGAGGTTTCTACGTTGACCCTGAGGCTAAGTTGCTCTTTATCATTCGTATCCGTGGgtatgtgccta--------ttatttgtgt-gttacataagttgttgcatatagattctgttttttatttacgtgattgtttgtcatttgcag
   | |  |||  ||| | ||||||||  ||||||||| |||| || || || |||||||| || |||| |||  | || ||||| |||||||||||||||||||  | |         ||||||   | | ||| |    | |   ||  | |||||| || | |||  |||     | ||  | || |||
AGCAAATGGAGCCGATTCAATTGAAGCATGAGGCTAAGCTGAAGGGTGGATTTTACGTTGATCCAGAGGTTAAACTTCTATTTATTATTCGTATCCGTGGgtatgcacttggactatagttatttccattgatacctttactttcatattaatattctggttctcattcccgtccac-tctggaactttcag

upper sequence: AT2G44120.1 (Arabidopsis thaliana), 5'ss of exon 3
lower sequence: Vv09s0054g00010.t01 (Vitis vinifera), 5'ss of exon 2
GATAACGAGTTGATCCGATTGAAGCGGGAGGCTAAGTTGAAAGGAGGTTTCTACGTTGACCCTGAGGCTAAGTTGCTCTTTATCATTCGTATCCGTGGgtatgtgccta--------ttatttgtgt-gttacataagttgttgcatatagattctgttttttatttacgtgattgtttgtcatttgcag
 | || ||| |||| | ||||||||| ||||||||| |||| || || || ||||||||||| ||||||||  | || ||||| |||||||||||||||||||  | |         ||||||   | | ||| |    | |   ||  | |||||| || | |||   ||     | ||  | || |||
CAAAAGGAGCTGATTCAATTGAAGCGTGAGGCTAAGCTGAAGGGTGGATTTTACGTTGACCCAGAGGCTAAACTTCTATTTATGATTCGTATCCGTGGgtatgcacttggactatagttatttccattgatacctttactttcatattaatattctggttctcattcctgttcac-tctggaactttcag

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|164081405|gb|ES167220.1|ES167220
EST:     GGCTAAGTTGCTCTTTATCATTCGTATCCGTGG                         TATCAATGCCATTGACCCAAAAACCAAGAAGATTCTGCAGCTCCTGCGTTT
genomic: GGCTAAGTTGCTCTTTATCATTCGTATCCGTGGgtatgtgcct ... tcatttgcagTATCAATGCCATTGACCCAAAAACCAAGAAGATTCTGCAGCTCCTGCGTTT
EST: gi|86036885|gb|DR332640.1|DR332640
EST:     TTCTACGTTGACCCTGAGGCTAAGTTGCTCTTTATCATTCGTATCCGTGG                         TATCAATGCCATTGACCCAAAAACCAAGAAGATTCTGCAGCTCCTGCGTTT
genomic: TTCTACGTTGACCCTGAGGCTAAGTTGCTCTTTATCATTCGTATCCGTGGgtatgtgcct ... tcatttgcagTATCAATGCCATTGACCCAAAAACCAAGAAGATTCTGCAGCTCCTGCGTTT
EST: gi|86036872|gb|DR332627.1|DR332627
EST:     TTCTACGTTGACCCTGAGGCTAAGTTGCTCTTTATCATTCGTATCCGTGG                         TATCAATGCCATTGACCCAAAAACCAAGAAGATTCTGCAGCTCCTGCGTTT
genomic: TTCTACGTTGACCCTGAGGCTAAGTTGCTCTTTATCATTCGTATCCGTGGgtatgtgcct ... tcatttgcagTATCAATGCCATTGACCCAAAAACCAAGAAGATTCTGCAGCTCCTGCGTTT
EST: gi|164121522|gb|ES012486.1|ES012486
EST:     TGCTCTTTATCATTCGTATCCGTGG                         TATCAATGCCATTGACCCAAAAACCAAGAAGATTCTGCAGCTCCTGCGTTT
genomic: TGCTCTTTATCATTCGTATCCGTGGgtatgtgcct ... tcatttgcagTATCAATGCCATTGACCCAAAAACCAAGAAGATTCTGCAGCTCCTGCGTTT
EST: gi|86036886|gb|DR332641.1|DR332641
EST:     TTCTACGTTGACCCTGAGGCTAAGTTGCTCTTTATCATTCGTATCCGTGG                         TATCAATGCCATTGACCCAAAAACCAAGAAGATTCTGCAGCTCCTGCGTTT
genomic: TTCTACGTTGACCCTGAGGCTAAGTTGCTCTTTATCATTCGTATCCGTGGgtatgtgcct ... tcatttgcagTATCAATGCCATTGACCCAAAAACCAAGAAGATTCTGCAGCTCCTGCGTTT
EST: gi|86036883|gb|DR332638.1|DR332638
EST:     TTCTACGTTGACCCTGAGGCTAAGTTGCTCTTTATCATTCGTATCCGTGG                         TATCAATGCCATTGACCCAAAAACCAAGAAGATTCTGCAGCTCCTGCGTTT
genomic: TTCTACGTTGACCCTGAGGCTAAGTTGCTCTTTATCATTCGTATCCGTGGgtatgtgcct ... tcatttgcagTATCAATGCCATTGACCCAAAAACCAAGAAGATTCTGCAGCTCCTGCGTTT
EST: gi|86036875|gb|DR332630.1|DR332630
EST:     TTCTACGTTGACCCTGAGGCTAAGTTGCTCTTTATCATTCGTATCCGTGG                         TATCAATGCCATTGACCCAAAAACCAAGAAGATTCTGCAGCTCCTGCGTTT
genomic: TTCTACGTTGACCCTGAGGCTAAGTTGCTCTTTATCATTCGTATCCGTGGgtatgtgcct ... tcatttgcagTATCAATGCCATTGACCCAAAAACCAAGAAGATTCTGCAGCTCCTGCGTTT
EST: gi|86036881|gb|DR332636.1|DR332636
EST:     TTCTACGTTGACCCTGAGGCTAAGTTGCTCTTTATCATTCGTATCCGTGG                         TATCAATGCCATTGACCCAAAAACCAAGAAGATTCTGCAGCTCCTGCGTTT
genomic: TTCTACGTTGACCCTGAGGCTAAGTTGCTCTTTATCATTCGTATCCGTGGgtatgtgcct ... tcatttgcagTATCAATGCCATTGACCCAAAAACCAAGAAGATTCTGCAGCTCCTGCGTTT
EST: gi|86036876|gb|DR332631.1|DR332631
EST:     TTCTACGTTGACCCTGAGGCTAAGTTGCTCTTTATCATTCGTATCCGTGG                         TATCAATGCCATTGACCCAAAAACCAAGAAGATTCTGCAGCTCCTGCGTTT
genomic: TTCTACGTTGACCCTGAGGCTAAGTTGCTCTTTATCATTCGTATCCGTGGgtatgtgcct ... tcatttgcagTATCAATGCCATTGACCCAAAAACCAAGAAGATTCTGCAGCTCCTGCGTTT
EST: gi|125278335|gb|EL292420.1|EL292420
EST:     CTAAGTTGCTCTTTATCATTCGTATCCGTGG                         TATCAATGCCATTGACCCAAAAACCAAAGAAGATTCTGCAGCTCCTGCGTT
genomic: CTAAGTTGCTCTTTATCATTCGTATCCGTGGgtatgtgcct ... tcatttgcagTATCAATGCCATTGACCCAAAAACCAA-GAAGATTCTGCAGCTCCTGCGTT
EST: gi|164100547|gb|ES122672.1|ES122672
EST:     CTACGTTGACCCTGAGGCTAAGTTGCTCTTTATCATTCGTATCCGTGG                         TATCAATGCCATTGACCCAAAA-CAAAGAAGATTCTGCAGCTCCTGCGTTT
genomic: CTACGTTGACCCTGAGGCTAAGTTGCTCTTTATCATTCGTATCCGTGGgtatgtgcct ... tcatttgcagTATCAATGCCATTGACCCAAAAACCAAGAAGATTCTGCAGCTCCTGCGTTT
EST: gi|86036880|gb|DR332635.1|DR332635
EST:     TTCTACGTTGACCCTGAGGCTAAGTTGCTCTTTATCATTCGTATCCGTGG                         TATCAATGCCATTGACCCAAAAACCAAGAAGATTCTGCAGCTCCTGCGTTT
genomic: TTCTACGTTGACCCTGAGGCTAAGTTGCTCTTTATCATTCGTATCCGTGGgtatgtgcct ... tcatttgcagTATCAATGCCATTGACCCAAAAACCAAGAAGATTCTGCAGCTCCTGCGTTT
EST: gi|86036879|gb|DR332634.1|DR332634
EST:     TTCTACGTTGACCCTGAGGCTAAGTTGCTCTTTATCATTCGTATCCGTGG                         TATCAATGCCATTGACCCAAAAACCAAGAAGATTCTGCAGCTCCTGCGTTT
genomic: TTCTACGTTGACCCTGAGGCTAAGTTGCTCTTTATCATTCGTATCCGTGGgtatgtgcct ... tcatttgcagTATCAATGCCATTGACCCAAAAACCAAGAAGATTCTGCAGCTCCTGCGTTT
EST: gi|86036882|gb|DR332637.1|DR332637
EST:     TTCTACGTTGACCCTGAGGCTAAGTTGCTCTTTATCATTCGTATCCGTGG                         TATCAATGCCATTGACCCAAAAACCAAGAAGATTCTGCAGCTCCTGCGTTT
genomic: TTCTACGTTGACCCTGAGGCTAAGTTGCTCTTTATCATTCGTATCCGTGGgtatgtgcct ... tcatttgcagTATCAATGCCATTGACCCAAAAACCAAGAAGATTCTGCAGCTCCTGCGTTT
EST: gi|164006836|gb|ES067520.1|ES067520
EST:     TGACCCTGAGGCTAAGTTGCTCTTTATCATTCGTATCCGTGG                         TATCAATGCCATTGACCCAAAAACCAAGAAGATTCTGCAGCTCCTGCGTTT
genomic: TGACCCTGAGGCTAAGTTGCTCTTTATCATTCGTATCCGTGGgtatgtgcct ... tcatttgcagTATCAATGCCATTGACCCAAAAACCAAGAAGATTCTGCAGCTCCTGCGTTT
EST: gi|86036873|gb|DR332628.1|DR332628
EST:     TTCTACGTTGACCCTGAGGCTAAGTTGCTCTTTATCATTCGTATCCGTGG                         TATCAATGCCATTGACCCAAAAACCAAGAAGATTCTGCAGCTCCTGCGTTT
genomic: TTCTACGTTGACCCTGAGGCTAAGTTGCTCTTTATCATTCGTATCCGTGGgtatgtgcct ... tcatttgcagTATCAATGCCATTGACCCAAAAACCAAGAAGATTCTGCAGCTCCTGCGTTT
EST: gi|86036877|gb|DR332632.1|DR332632
EST:     TTCTACGTTGACCCTGAGGCTAAGTTGCTCTTTATCATTCGTATCCGTGG                         TATCAATGCCATTGACCCAAAAACCAAGAAGATTCTGCAGCTCCTGCGTTT
genomic: TTCTACGTTGACCCTGAGGCTAAGTTGCTCTTTATCATTCGTATCCGTGGgtatgtgcct ... tcatttgcagTATCAATGCCATTGACCCAAAAACCAAGAAGATTCTGCAGCTCCTGCGTTT
EST: gi|86036878|gb|DR332633.1|DR332633
EST:     TTCTACGTTGACCCTGAGGCTAAGTTGCTCTTTATCATTCGTATCCGTGG                         TATCAATGCCATTGACCCAAAAACCAAGAAGATTCTGCAGCTCCTGCGTTT
genomic: TTCTACGTTGACCCTGAGGCTAAGTTGCTCTTTATCATTCGTATCCGTGGgtatgtgcct ... tcatttgcagTATCAATGCCATTGACCCAAAAACCAAGAAGATTCTGCAGCTCCTGCGTTT
EST: gi|86036874|gb|DR332629.1|DR332629
EST:     TTCTACGTTGACCCTGAGGCTAAGTTGCTCTTTATCATTCGTATCCGTGG                         TATCAATGCCATTGACCCAAAAACCAAGAAGATTCTGCAGCTCCTGCGTTT
genomic: TTCTACGTTGACCCTGAGGCTAAGTTGCTCTTTATCATTCGTATCCGTGGgtatgtgcct ... tcatttgcagTATCAATGCCATTGACCCAAAAACCAAGAAGATTCTGCAGCTCCTGCGTTT
EST: gi|124968135|gb|EL042110.1|EL042110
EST:     GCTAAGTTGCTCTTTATCATTCGTATCCGTGG                         TATCAATGCCATTGACCCAAAAACCAAGAAGATTCTGCAGCTCCTGCGTTT
genomic: GCTAAGTTGCTCTTTATCATTCGTATCCGTGGgtatgtgcct ... tcatttgcagTATCAATGCCATTGACCCAAAAACCAAGAAGATTCTGCAGCTCCTGCGTTT