1 5' 3' | 2 5' 3' | 3 5' 3' |
GCTCGGTATGCTGGTGGAAGGAGGCGCAGATAATGTAAATCAGTGCTTCCTTGAAGCTTCTCGTTTTGGGAGCACAGAACTTGTGCGCATCTTGTTGCAGgtaaatctaattcttaatgactgcttgcaagttactttgtgcaatctaactgaactttttcctggtgcag
species | Arabidopsis thaliana |
transcript | AT2G44090.2 |
intron # | 3 |
splice site | 5' |
intron type | U2 |
EST: TTGAAGCTTCTCGTTTTGGGAGCACAGAACTTGTGCGCATCTTGTTGCAG ATTGCTCAAAGGAATAEST: gi|86087288|gb|DR383047.1|DR383047
genomic: TTGAAGCTTCTCGTTTTGGGAGCACAGAACTTGTGCGCATCTTGTTGCAGgtaaatctaa ... cctggtgcagATTGCTCAAAGGAATA
EST: TTGAAGCTTCTCGTTTTGGGAGCACAGAACTTGTGCGCATCTTGTTGCAG ATTGCTCAAAGGAATAGCTTAGACGTGGATGTTGACTTAGCCCTTGGTTTTEST: gi|124715640|gb|EH807042.1|EH807042
genomic: TTGAAGCTTCTCGTTTTGGGAGCACAGAACTTGTGCGCATCTTGTTGCAGgtaaatctaa ... cctggtgcagATTGCTCAAAGGAATAGCTTAGACGTGGATGTTGACTTAGCCCTTGGTTTT
EST: TTGAAGCTTCTCGTTTTGGGAGCACAGAACTTGTGCGCATCTTGTTGCAG ATTGCTCAAAAGGAATA
genomic: TTGAAGCTTCTCGTTTTGGGAGCACAGAACTTGTGCGCATCTTGTTGCAGgtaaatctaa ... cctggtgcagATTGCTCAAA-GGAATA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GCTCGGTATGCTGGTGGAAGGAGGCGCAGATAATGTAAATCAGTGCTTCCTTGAAGCTTCTCGTTTTGGGAGCACAGAACTTGTGCGCATCTTGTTGCAGgtaaatctaattcttaatgactgcttgcaagttactttgtgcaatctaactgaactttttcctggtgcag
- - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - TGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCA