Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GATCGGATTCCTGGAATTGACATACTTCTGAAGGATAGTGATAAGTGGATGTTTGCTGGCCATGAGGTTCGGATACTTGACACTCCTGGCCATACACAAGgtttgtagctgccataacctctactgtaaaatactaagaacacatctatacagtcaaatattgccaacgttagaaacctttggtggatcacatattagta...

Basic information

species Arabidopsis thaliana
transcript AT2G43430.2
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT2G43430.2 (Arabidopsis thaliana), 5'ss of exon 3
lower sequence: GLYMA15G03320.1 (Glycine max), 5'ss of exon 4
GATCGGATTCCTGGAATTGACATACTTCTGAAGGATAGTGATAAGTGGATGTTTGCTGGCCATGAGGTTCGGATACTTGACACTCCTGGCCATACACAAGgtt-tgtagctgccataacctctactgtaa--------aatactaagaacacatctatacagtcaaatattgccaacgttagaaacctt--tggtggatcacatattagta----------
 |  |||||||||| ||||| || |   |||| ||| ||||||||||||||||||||||||||||||| ||  || | ||||||||||| || || ||||||    |   |||  ||    |    ||||        |||| |   ||   ||  | | | ||   | |     | ||     |  ||  | |||    |  ||||  ||          
AAAAGGATTCCTGGCATTGATATCCACTTGAACGATGGTGATAAGTGGATGTTTGCTGGCCATGAGGTGCGTGTAATGGACACTCCTGGTCACACCCAAGgtcacattcatgctctatttgcattagtaattcttcttaatattgtaaa-gtattaaaaaaatctggtttcttttatgtggctcatttttctagtgttctatttatttatactgtatgcag

upper sequence: AT2G43430.2 (Arabidopsis thaliana), 5'ss of exon 3
lower sequence: GLYMA13G42070.2 (Glycine max), 5'ss of exon 4
GATCGGATTCCTGGAATTGACATACTTCTGAAGGATAGTGATAAGTGGATGTTTGCTGGCCATGAGGTTCGGATACTTGACACTCCTGGCCATACACAAGgtt-tgtagctgccataacctctactgtaa--------aatactaagaacacatctatacagtcaaatattgccaacgttagaaacctt--tggtggatcacatattagta----------
||  |||||||||| ||||| || |   |||| ||| | ||||||||||||||||||||||||||||| ||  || | ||||| ||||| ||||| | ||||    |   |||| ||    |    ||||        |||  |   ||    |  | | | ||   | |       ||     |  ||  | |||    |  ||||  ||          
GAAAGGATTCCTGGCATTGATATCCACTTGAATGATGGAGATAAGTGGATGTTTGCTGGCCATGAGGTGCGTGTAATGGACACGCCTGGTCATACCCGAGgtcacattcatgccctatttgcattagtaattcttcttaatgttgtaaa-gtgttaaaaaaatctgttttctattgtgtggctcatttttctagtgttctatttatttatactgtatgcag

upper sequence: AT2G43430.2 (Arabidopsis thaliana), 5'ss of exon 3
lower sequence: Vv05s0102g01180.t01 (Vitis vinifera), 5'ss of exon 6
GATCGGATTCCTGGAATTGACATACTTCTGAAGGATAGTGATAAGTGGATGTTTGCTGGCCATGAGGTTCGGATACTTGACACTCCTGGCCATACACAAGgtttgtagctgccataacctctactgtaaaatactaagaacacatctatacagtcaaatat-tgccaacgttagaaacctttggtgga--tcacatattagta
||||| |||||||||||||| ||| || |||| ||| | || |||||||||||||| |||||||||||     || |||| |||||||| ||||| | ||||          ||  |    || |  ||||||    ||   | |   |    | ||| || ||   |  | | || |   || || |      | |||  | 
GATCGAATTCCTGGAATTGATATAGTTTTGAAAGATGGAGACAAGTGGATGTTTGCAGGCCATGAGGTGGTTGTAATTGAAACTCCTGGTCATACCCGAGgtcatatttcatcactaatcatattagaaaatatctggatttcgtacttt---tgaaacatgtgatcatttcaaaatcaactgatgaaaacagtacatttctt