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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATAGTGGTAACTTAGAACAATGGCTACATGGAGCAATGCGGCAACATGGAAATCTCACTTGGGAAGCACGGATGAAAATCATTACTGGTACTGCACAAGCgtaagtggtttgaaacagtttagcttttgttggatatgttcaatgcttgattattaaaagggtctgcaatttgtacaactttacag

Basic information

species Arabidopsis thaliana
transcript AT2G42960.1
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT2G42960.1 (Arabidopsis thaliana), 5'ss of exon 3
lower sequence: GRMZM2G026301_T01 (Zea mays), 5'ss of exon 4
ATAGTGGTAACTTAGAACAATGGCTACATGGAGCAATGCGGCAACATGGAAATCTCACTTGGGAAGCACGGATGAAAATCATTACTGGTACTGCACAAGCgtaag---tggtttga--aacagtttagcttttgttggatatgttcaatgcttgattattaaaagggtct--gcaatttgtacaactttacag
| | ||| || |||||||| ||||| ||||| || ||||| || |||||   ||| ||||||||||| |||||||||||||||  ||| | |||  | |||||||   |||       || | |||  || || || |||   |   ||| ||    ||  || |  | |    ||||  |   |   |||||
ACAATGGAAATTTAGAACAGTGGCTTCATGGTGCCATGCGTCAGCATGGTGTTCTTACTTGGGAAGCCCGGATGAAAATCATTCTTGGAATTGCTAAGGCgtaagacatggaccattcaatattttgtctcttctttgatgcat---atgttttgccatctaaggcatttttataattgatgatatactacag

upper sequence: AT2G42960.1 (Arabidopsis thaliana), 5'ss of exon 3
lower sequence: GLYMA08G42170.2 (Glycine max), 5'ss of exon 3
ATAGTGGTAACTTAGAACAATGGCTACATGGAGCAATGCGGCAACATGGAAATCTCACTTGGGAAGCACGGATGAAAATCATTACTGGTACTGCACAAGCgtaagtggt-ttgaaacagtttagcttttgttggatatgt----tcaatgcttgattattaaaag--ggtctgcaatttgtacaactttacag-------
| | ||||||||||||||||||||||||||| || ||| | ||||| || |  || || |||||||| ||||||||| | || ||||| || ||  ||||||||||  |  |  || | || |      |    | || |    |  ||| |   || |  |||   ||| ||    |  |   | | |   |       
ACAATGGTAACTTAGAACAATGGCTACATGGGGCTATGAGCCAACAAGGGACACTTACCTGGGAAGCCCGGATGAAAGTTATAACTGGAACAGCCAAAGCgtaagttctactagaaaaattcaaacagaggacaacatttattatttatgttgacttgtgcaaaattggtttgtttatactgtgattgtcttgaatccct

upper sequence: AT2G42960.1 (Arabidopsis thaliana), 5'ss of exon 3
lower sequence: GLYMA18G12830.1 (Glycine max), 5'ss of exon 3
ATAGTGGTAACTTAGAACAATGGCTACATGGAGCAATGCGGCAACATGGAAATCTCACTTGGGAAGCACGGATGAAAATCATTACTGGTACTGCACAAGCgtaagtg--gtttgaaacagtt----------tagcttttgttggatatgttca---atgcttgatta-ttaaaagggtctgcaatttgtacaactttacag
  | ||||||||||||||||||||||||||| || ||| | ||||| || |  || || |||||||| || |||||| | || ||||| || ||  ||||||||||     |||||| | |            | | ||| || | |||||| |    |||   |||  || | | |   ||  |||      | |      
-CAATGGTAACTTAGAACAATGGCTACATGGGGCTATGAGCCAACAAGGGACACTTACCTGGGAAGCTCGAATGAAAGTTATAACTGGAACAGCCAAAGCGtaagttctacttgaaaaattcaaacagaggacaacatttattagttatgttgacttgtgcaaaattggtttatatgaattgtgattgtcttgaatccctt-

upper sequence: AT2G42960.1 (Arabidopsis thaliana), 5'ss of exon 3
lower sequence: GLYMA14G03290.1 (Glycine max), 5'ss of exon 3
ATAGTGGTAACTTAGAACAATGGCTACATGGAGCAATGCGGCAACATGGAAATCTCACTTGGGAAGCACGGATGAAAATCATTACTGGTACTGCACAAGCgtaagt----ggtttgaaacagtttagcttttgttg-gatatgttcaatgcttgattattaaaagggtc--tgcaatttgtacaactttacag-------
| | ||||||||||||||||||| |||||||||  ||||  ||| ||||||  || || ||||| || || |||||| | ||   ||| |||||  ||||||||||    |||   |   |   ||  |    | |  || | ||  ||  |    |   |||    ||  |  ||||   | || | |           
ACAATGGTAACTTAGAACAATGGTTACATGGAGACATGCATCAATATGGAACACTTACCTGGGAGGCCCGCATGAAAGTTATACTTGGCACTGCCAAAGCgtaagttcagggtgcaacttaaaatatataccatggtaatcttttgtataatctggtgccaaatcactcggtataattatcataaatctctcatctctga