1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
GTGATTGCTGTTATATTTGCTTGGAACAACTTGTGGCTGGGAAAGCTCTCTGAGCTTGGAAACAAGTATCAGAAAGATGCTCTTCCTACGCTTCTTTATGgtgagctaccaattacagagagtaatttttttactattacatagcatcgttcaaatatttactgttcttgggattactgcag
species | Arabidopsis thaliana |
transcript | AT2G42770.1 |
intron # | 3 |
splice site | 5' |
intron type | U2 |
EST: TGGAAACAAGTATCAGAAAGATGCTCTTCCTACGCTTCTTTATG GATTTCGCTTCTGGGTTCCCGTTAGCATACTTAACTTTTGEST: gi|47832267|gb|CK121951.1|CK121951
genomic: TGGAAACAAGTATCAGAAAGATGCTCTTCCTACGCTTCTTTATGgtgagctacc ... attactgcagGATTTCGCTTCTGGGTTCCCGTTAGCATACTTAACTTTTG
EST: TGAGCTTGGAAACAAGTATCAGAAAGATGCTCTTCCTACGCTTCTTTATG GATTTCGCTTCTGGGTTCCCGTTAGCATACTTAACTTTTGEST: gi|124918092|gb|EH991962.1|EH991962
genomic: TGAGCTTGGAAACAAGTATCAGAAAGATGCTCTTCCTACGCTTCTTTATGgtgagctacc ... attactgcagGATTTCGCTTCTGGGTTCCCGTTAGCATACTTAACTTTTG
EST: CTTGGAAACAAGTATCAGAAAGATGCTCTTCCTACGCTTCTTTATG GATTTCGCTTCTGGGTTCCCGTTAGCATACTTAACTTTTGEST: gi|86077698|gb|DR373455.1|DR373455
genomic: CTTGGAAACAAGTATCAGAAAGATGCTCTTCCTACGCTTCTTTATGgtgagctacc ... attactgcagGATTTCGCTTCTGGGTTCCCGTTAGCATACTTAACTTTTG
EST: TGAGCTTGGAAACAAGTATCAGAAAGATGCTCTTCCTACGCTTCTTTATG GATTTCGCTTCT-GGTTCCCGTTAGCATACTTAACTTTTGEST: gi|86074713|gb|DR370470.1|DR370470
genomic: TGAGCTTGGAAACAAGTATCAGAAAGATGCTCTTCCTACGCTTCTTTATGgtgagctacc ... attactgcagGATTTCGCTTCTGGGTTCCCGTTAGCATACTTAACTTTTG
EST: TGAGCTTGGAAACAAGTATCAGAAAGATGCTCTTCCTACGCTTCTTTATG GATTTCGCTTCT-GGTTCCCGTTAGCATACTTAACTTTTGEST: gi|124816753|gb|EH901619.1|EH901619
genomic: TGAGCTTGGAAACAAGTATCAGAAAGATGCTCTTCCTACGCTTCTTTATGgtgagctacc ... attactgcagGATTTCGCTTCTGGGTTCCCGTTAGCATACTTAACTTTTG
EST: AAAGATGCTCTTCCTACGCTTCTTTATG GATTTCGCTTCTGGGTTCCCGTTAGCATACTTAACTTTTG
genomic: AAAGATGCTCTTCCTACGCTTCTTTATGgtgagctacc ... attactgcagGATTTCGCTTCTGGGTTCCCGTTAGCATACTTAACTTTTG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GTGATTGCTGTTATATTTGCTTGGAACAACTTGTGGCTGGGAAAGCTCTCTGAGCTTGGAAACAAGTATCAGAAAGATGCTCTTCCTACGCTTCTTTATGgtgagctaccaattacagagagtaatttttttactattacatagcatcgttcaaatatttactgttcttgggattactgcag
- - - - - - - - - - - - - - - - - - - - - - - - - GAGCTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGATG