1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
ATAACGGTTCCGATTATTATCTCTCTGTCAAAGGGTATTGAAACTGCTCTTGAACCAGTTCCACATATCATAACTCCAACAAAGATGATTCATCAAGCAAgtaagctttttcttcttccttttgctccttttatattgagtctattgacacaatcttgcttagttttcttgaattggttcttactttggtgtttgtggtag
species | Arabidopsis thaliana |
transcript | AT2G41540.1 |
intron # | 3 |
splice site | 5' |
intron type | U2 |
EST: TCCACATATCATAACTCCAACAAAGATGATTCATCAAGCAA CTGGTGTGCCGATTGACAATGTCCTGTATCTTGGTGGACCAAACATTGEST: gi|124834176|gb|EH918615.1|EH918615
genomic: TCCACATATCATAACTCCAACAAAGATGATTCATCAAGCAAgtaagctttt ... tttgtggtagCTGGTGTGCCGATTGACAATGTCCTGTATCTTGGTGGACCAAACATTG
EST: TGAACCAGTTCCACATATCATAACTCCAACAAAGATGATTCATCAAGCAA CTGGTGTGACCGATTGACAATGTCCTGTATCT
genomic: TGAACCAGTTCCACATATCATAACTCCAACAAAGATGATTCATCAAGCAAgtaagctttt ... tttgtggtagCTGGTGTG-CCGATTGACAATGTCCTGTATCT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ATAACGGTTCCGATTATTATCTCTCTGTCAAAGGGTATTGAAACTGCTCTTGAACCAGTTCCACATATCATAACTCCAACAAAGATGATTCATCAAGCAAgtaagctttttcttcttccttttgctccttttatattgagtctattgacacaatcttgcttagttttcttgaattggttcttactttggtgtttgtggtag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCAA