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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GCTTTACCGTCCTCCTCGCGCCTCTCACTGTTCAATCTGTAACAACTGTGTTCAAAGGTTTGATCATCATTGTCCATGGGTTGGCCAATGCATAGCCTTAgtaagtcttccaaaacgtttatttttgaatctcatgcaacaaaaactgtgattaacataatagctctttgcag

Basic information

species Arabidopsis thaliana
transcript AT2G40990.1
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT2G40990.1 (Arabidopsis thaliana), 5'ss of exon 3
lower sequence: LOC_Os12g03730.1 (Oryza sativa), 5'ss of exon 3
GCTTTACCGTCCTCCTCGCGCCTCTCACTGTTCAATCTGTAACAACTGTGTTCAAAGGTTTGATCATCATTGTCCATGGGTTGGCCAATGCATAGCCTTAgtaagt---cttccaa------aacgtttatttttgaatctcatgcaacaaaaactgtgattaacataatagctctttgcag------------------
    ||||| || || ||  |||| || || || ||||| |||||||| ||  ||| ||||||||| || ||||||||||| ||||||||||| |   | ||||||   |   |||      |    | | | | |          ||   ||  ||   ||    || ||  | ||| ||                   
AAGGTACCGCCCACCACGATCCTCACATTGCTCCATCTGCAACAACTGCGTCGAAAAGTTTGATCACCACTGTCCATGGGTCGGCCAATGCATTGGACTTgtaagtaaacaatcaatgatgcagtaatcagtatagtcatcagcctaattcaatgtgcagttccagtactatttgtttccatagtgtttttagaaatatg

upper sequence: AT2G40990.1 (Arabidopsis thaliana), 5'ss of exon 3
lower sequence: GLYMA03G27420.1 (Glycine max), 5'ss of exon 2
GCTTTACCGTCCTCCTCGCGCCTCTCACTGTTCAATCTGTAACAACTGTGTTCAAAGGTTTGATCATCATTGTCCATGGGTTGGCCAATGCATAGCCTTAgtaagtcttccaaaacgtttatttttg-aatctcatgcaacaaaaactgtgattaacataatagctctttgcag--------------------------
| | || ||||| || || || || || ||||| |||||||| || |||||||| | |||||||||||||||||| ||||| || || || || |  | |||||||         | |   | | |  ||  |  |  |    ||| ||   |||  ||| |||   ||                               
GTTGTATCGTCCACCACGTGCTTCCCATTGTTCCATCTGTAATAATTGTGTTCAGAAGTTTGATCATCATTGTCCTTGGGTCGGTCAGTGTATTGGATCAgtaagtaaaagttttcttacttctctacaacattgtttagttgaaaatgattttattatattagagtttaatttctatcaaccaattctaaatcagcata

upper sequence: AT2G40990.1 (Arabidopsis thaliana), 5'ss of exon 3
lower sequence: GLYMA19G30380.1 (Glycine max), 5'ss of exon 2
GCTTTACCGTCCTCCTCGCGCCTCTCACTGTTCAATCTGTAACAACTGTGTTCAAAGGTTTGATCATCATTGTCCATGGGTTGGCCAATGCATAGCCTTAgtaag-------tcttccaaaacgtt-tatttttgaatctcatgca-acaaaaactgtgattaacataatagctctttgcag------------------
| | || ||||| || || || || || || || || || || || |||||||| | |||||||||||||||||| |||||||| ||||| || |  | ||||||       | |||  ||   || |||| | || | | ||    |   |   |  | ||||  |  |   | ||  ||                   
GTTATATCGTCCACCACGTGCTTCCCATTGCTCCATTTGCAATAATTGTGTTCAGAAGTTTGATCATCATTGTCCTTGGGTTGGTCAATGTATTGGATCAgtaagtataagttattcttaattattatattatagagtttaatttgtatggacttttagtttaaattttttaatgttatcaaaatttcaaatcaatataa

upper sequence: AT2G40990.1 (Arabidopsis thaliana), 5'ss of exon 3
lower sequence: Vv08s0040g00370.t01 (Vitis vinifera), 5'ss of exon 3
GCTTTACCGTCCTCCTCGCGCCTCTCACTGTTCAATCTGTAACAACTGTGTTCAAAGGTTTGATCATCATTGTCCATGGGTTGGCCAATGCATAGCCTTAgtaagtctt--ccaaaacgtttatttttgaatctca--------tgcaacaaaaactgtgattaacataatagctctttgcag---------------------------------------------------------------------------------------------------------
| | || |||||||| || || |||||||| |||||||| ||||||||||| || | ||||||||| || ||||| ||||||||||| || || ||  | |||||  ||  ||| || | ||  |  | ||  | |        | ||  ||   |    ||| | |||| |  |   ||  |                                                                                                         
GATATATCGTCCTCCCCGTGCTTCTCACTGCTCAATCTGCAACAACTGTGTGCAGAAGTTTGATCACCACTGTCCTTGGGTTGGCCAGTGTATTGCTCTGgtaagcttttcccacaaagctttgtcctaaacattaatggagctttcattaatcccccgtatttatataagattttcatgttgtttatgataccaaatcaaggctggtttcttttaatcacccttttttctgatctaaacatttaggtatattcaataaatgactttgtttcttgcttttggttgcag