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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GACAAGGCCATTAAGAGGTTCATTGTGAGGAACATTGTGGAGCAGGCTGCTATTAGAGATGTTCAGGAAGCTAGCGTCTATGAGGgtatcatttcattcctctcttttatgtttctttgacctttgttataattctacattataaagtttggatttttagactattggtattgagaaagtttggatttttcgactattggcattgaagtttactgagatctgtaacttgattgaatcatgtaattgacag

Basic information

species Arabidopsis thaliana
transcript AT2G40510.1
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT2G40510.1 (Arabidopsis thaliana), 5'ss of exon 3
lower sequence: GRMZM5G899149_T01 (Zea mays), 5'ss of exon 3
GACAAGGCCATTAAGAGGTTCATTGTGAGGAACATTGTGGAGCAGGCTGCTATTAGAGATGTTCAGGAAGCTAGCGTCTATGAGGgtatcatttcattcctctcttttatgtttctttgacctttgttataattctacattataaagtttggatttttagactattggtattgagaaagtttggatttttcgactattggcattgaagtttactgagatctgtaacttgattgaatcatgtaattgacag
|| ||||| || ||| ||||| | |||||||||||||| |||||||||||  | |||||||| ||||| ||  | ||  |||| ||||   |   ||  |  | |||  ||  |  || |  ||  || ||| | ||  ||    ||     ||| |   |  ||    |||  || ||                                                                       
GATAAGGCTATCAAGCGGTTCTTGGTGAGGAACATTGTTGAGCAGGCTGCCGTGAGAGATGTGCAGGAGGCCTGTGTACATGATGgtactgtag-atatccttatttcttgcatgatttaatttaatt-taactgtaggttgaccagag-aaattgtcctaacatgttcatttggacag-----------------------------------------------------------------------

upper sequence: AT2G40510.1 (Arabidopsis thaliana), 5'ss of exon 3
lower sequence: GRMZM5G899149_T02 (Zea mays), 5'ss of exon 2
---------------GACAAGGCCATTAAGAGGTTCATTGTGAGGAACATTGTGGAGCAGGCTGCTATTAGAGATGTTCAGGAAGCTAGCGTCTATGAGGgtatcatttcattcctctcttttatgtttctttgacctttgttataattctacattataaagtttggatttttagactattggtattgagaaagtttggatttttcgactattggcattgaagtttactgagatctgtaacttgattgaatcatgtaattgacag
               || ||||| || ||| ||||| | |||||||||||||| |||||||||||  | |||||||| ||||| ||  | ||  |||| ||||   |   ||  |  | |||  ||  |  || |  ||  || ||| | ||  ||    ||     ||| |   |  ||    |||  || ||                                                                       
TTGCTGTACTTGCAGGATAAGGCTATCAAGCGGTTCTTGGTGAGGAACATTGTTGAGCAGGCTGCCGTGAGAGATGTGCAGGAGGCCTGTGTACATGATGgtactgtag-atatccttatttcttgcatgatttaatttaatt-taactgtaggttgaccagag-aaattgtcctaacatgttcatttggacag-----------------------------------------------------------------------

upper sequence: AT2G40510.1 (Arabidopsis thaliana), 5'ss of exon 3
lower sequence: GLYMA17G18200.1 (Glycine max), 5'ss of exon 3
GACAAGGCCATTAAGAGGTTCATTGTGAGGAACATTGTGGAGCAGGCTGCTATTAGAGATGTTCAGGAAGCTAGCGTCTATGAGGgtatcatttcattcctctcttttatgtttctttgacctttgttataattctacattataa--agtttggatttttagactattggtattg--agaaa----gtttggatttttcgactattggcattgaagtttactgagatctgtaacttgattga--atcatgtaattgacag-------
||||||||||| ||||||||  |||||||||||||||| || ||||||||  | |||||||| ||||||||  | ||||||||  |||  | |   || ||    ||||  ||  |   |      ||  |   ||   || |      |  | |  | |||  | || || |||  |||||    | |||    |||  ||   |  |       | |  | |||  ||| | ||  ||     |  | ||||||           
GACAAGGCCATCAAGAGGTTTCTTGTGAGGAACATTGTTGAACAGGCTGCAGTCAGAGATGTGCAGGAAGCCTGTGTCTATGAACgtaataataattttcttatatttaccttcttaaaaggaaaatttcacacctgtgttgttttttatcggcaaatgtagtttgttagttttgttagaaatgttgcttgaggatttgaacctctccctcctccctcttgttagaagtgttatttatttcgttgttttttaattgttgatttgtag

upper sequence: AT2G40510.1 (Arabidopsis thaliana), 5'ss of exon 3
lower sequence: GLYMA05G21370.1 (Glycine max), 5'ss of exon 3
GACAAGGCCATTAAGAGGTTCATTGTGAGGAACATTGTGGAGCAGGCTGCTATTAGAGATGTTCAGGAAGCTAGCGTCTATGAGGgtatcatttcattcctctcttttatgtttctttgacctttgttataattctacattataaagtttggatttttagactattggtattgagaaagtttggatttttcgactattggcattgaagtttactgagatctgtaacttgattgaatcatgtaattgacag
||||||||||| ||||||||  |||||||||||||||| || ||||||||  | |||||||| ||||||||  | ||||||||  |||  | |   || ||  | || |  || || ||   ||| ||    ||    |    ||| | |      |     | ||||| ||   |  |||   |||| | |                                                          
GACAAGGCCATCAAGAGGTTTCTTGTGAGGAACATTGTTGAACAGGCTGCAGTCAGAGATGTGCAGGAAGCCTGTGTCTATGAACgtaataataattttcttacattcaccttactctgttttttttt----tttcgtagaggaaactctcacacctg----ttttggttttttaattgtt--aatttgtag----------------------------------------------------------

upper sequence: AT2G40510.1 (Arabidopsis thaliana), 5'ss of exon 3
lower sequence: GLYMA02G40660.1 (Glycine max), 5'ss of exon 3
GACAAGGCCATTAAGAGGTTCATTGTGAGGAACATTGTGGAGCAGGCTGCTATTAGAGATGTTCAGGAAGCTAGCGTCTATGAGGgtatcatttcattcctctcttttatgtttctttgacctttgttataattctacattataaagtttggatttttagactattggtattgagaaagtttggatttttcgactattggcattgaagtttactgagatctgtaacttgattgaatcatgtaattgacag
||||||||||| ||||||||  | |||||||||||||| || ||||||||  | |||||||| ||||||||| | ||||||||  ||| | ||  | | |  | ||||   |||| |  |  |||   ||   | ||  ||||  | ||    |||| | |  | |  ||||  | |                                                                         
GACAAGGCCATCAAGAGGTTTCTGGTGAGGAACATTGTTGAACAGGCTGCAGTCAGAGATGTGCAGGAAGCTTGTGTCTATGAACgtaactttctaattcgttatttt---tttcatgaaaatttcgcatctgtttatgttatttatttgtatttttaaaaaaaatattattttgcag------------------------------------------------------------------------

upper sequence: AT2G40510.1 (Arabidopsis thaliana), 5'ss of exon 3
lower sequence: GLYMA06G14950.1 (Glycine max), 5'ss of exon 3
GACAAGGCCATTAAGAGGTTCATTGTGAGGAACATTGTGGAGCAGGCTGCTATTAGAGATGTTCAGGAAGCTAGCGTCTATGAGGgtatcatttcattcctctcttttatgtttctttgacctttgttataattctacattataaagtttggatttttagactattggtattgagaaagtttggatttttcgactattggcattgaagtttactgagatctgtaacttgattgaatcatgtaattgacag
|||||||| || ||||||||  | |||||||||||||| || ||||||||  | |||||||||||||| ||| | ||||||||  |||  ||||   || |||  ||||  |||||||   || | || |  || ||      | | ||     |  ||     || || ||  |||  | |  |||| | |                                                          
GACAAGGCTATCAAGAGGTTTCTGGTGAGGAACATTGTTGAACAGGCTGCAGTCAGAGATGTTCAGGAGGCTTGTGTCTATGAACgta--attt---tcttcttctttacctttcttttttctgtttttttgttgtagg----agaattccacgtcctatttattttgttttttgaatttgttaatttgtag----------------------------------------------------------

upper sequence: AT2G40510.1 (Arabidopsis thaliana), 5'ss of exon 3
lower sequence: GLYMA14G38950.1 (Glycine max), 5'ss of exon 3
GACAAGGCCATTAAGAGGTTCATTGTGAGGAACATTGTGGAGCAGGCTGCTATTAGAGATGTTCAGGAAGCTAGCGTCTATGAGGgtatcatttcattcctctcttttatgtttctttgacctttgttataattctacattataaagtttggatttttagactattggtattgagaaagtttggatttttcgactattggcattgaagtttactgagatctgtaacttgattgaatcatgtaattgacag
||||||||||| ||||||||  | || ||||||||||| || ||||||||  | |||||||| ||||||||| | ||||||||  |||  ||||  ||   |  | || | ||| ||| |  |||   | ||||  ||||      ||||   || ||    | ||  | ||   ||| | |  || |   |                                                          
GACAAGGCCATCAAGAGGTTTTTGGTTAGGAACATTGTTGAACAGGCTGCAGTCAGAGATGTGCAGGAAGCTTGTGTCTATGAACgta--attttcttatccgttatt-tatttattt-atttttaggaaaatttcacatct----gtttatgttgtttatttgtttttttttttaaattgtttatgtgcag----------------------------------------------------------

upper sequence: AT2G40510.1 (Arabidopsis thaliana), 5'ss of exon 3
lower sequence: GLYMA16G06000.1 (Glycine max), 5'ss of exon 2
GACAAGGCCATTAAGAGGTTCATTGTGAGGAACATTGTGGAGCAGGCTGCTATTAGAGATGTTCAGGAAGCTAGCGTCTATGAGGgta----tcatttcattcctctcttttatgtttctttgacctttgttataattctacattataaagtttggatttttagactattggtattgagaaagtttggatttttcgactattggcattgaagtttactgagatctgtaacttgattgaatcatgtaattgacag
|||||||| |||||||||||  | |||||||||||||| || ||||||||  | ||||||||   ||||||  | |||||||||  ||    || | |    | ||||| || | |||     |  |||   ||   | ||  ||||  | || |  ||||||    |||| |||| | |                                                                          
GACAAGGCTATTAAGAGGTTTCTGGTGAGGAACATTGTTGAACAGGCTGCAGTCAGAGATGTGTTGGAAGCCTGTgtctatgagcataattttcttctttaccttctctcttttttttgaggaaaatttcacatgtgtttatgttatttatttag--ttttta----attgttatttacag-------------------------------------------------------------------------

upper sequence: AT2G40510.1 (Arabidopsis thaliana), 5'ss of exon 3
lower sequence: Vv06s0004g07940.t01 (Vitis vinifera), 5'ss of exon 3
GACAAGGCCATTAAGAGGTTCATTGTGAGGAACATTGTGGAGCAGGCTGCTATTAGAGATGTTCAGGAAGCTAGCGTCTATGAGGgtatcatttcatt-cctctcttttatgtttctttgacctttgttataattctacattataaagtttggatttttagactattggtattgagaaagtttggatttttcgactattggcattgaagtttactgagatctgtaacttgattgaatcatgtaattgacag
||||| || |||||||||||  | |||||||||||||||||||| |||||| || | ||||| || |||||| | || |||||  |||    ||| ||  |  |  ||| | | |  ||   |||| |  | ||  |     |   |||||| ||||||  |||  ||                                                                                   
GACAAAGCTATTAAGAGGTTTCTGGTGAGGAACATTGTGGAGCAAGCTGCTGTTCGTGATGTGCAAGAAGCTTGTGTTTATGATAgtaattcttctttatcaatactttctatcttcttcttctttatggtgatgatgatccactgagtttgtatttttctacttgtgaag--------------------------------------------------------------------------------

upper sequence: AT2G40510.1 (Arabidopsis thaliana), 5'ss of exon 3
lower sequence: Vv13s0067g02700.t01 (Vitis vinifera), 5'ss of exon 4
GACAAGGCCATTAAGAGGTTCATTGTGAGGAACATTGTGGAGCAGGCTGCTATTAGAGATGTTCAGGAAGCTAGCGTCTATGAGGgtatcatttca-ttcctctcttttatgtttctttgacctttgttataattctacattataaagtttggatttttagactattggtattgagaaagtttggatttttcgactattggcattgaagtttactgagatctgtaacttgattgaatcatgtaattgacag
|||||||| || ||||||||  | ||||||||||| |||||||| |||||  | || ||||||||||| ||  ||||||||||  |||  ||| || ||||||| ||||  | |  ||||  || |||| |   |||  |||     | |   ||| |  |  ||                                                                                      
GACAAGGCAATCAAGAGGTTTTTGGTGAGGAACATCGTGGAGCAAGCTGCAGTGAGGGATGTTCAGGAGGCCTGCGTCTATGACAgta--attacacttcctctttttttcggtaatttgttctgtgttttttatctg-atttgggggct--aattctctgtgtag-------------------------------------------------------------------------------------

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|86036205|gb|DR331958.1|DR331958
EST:     TGTGGAGCAGGCTGCTATTAGAGATGTTCAGGAAGCTAGCGTCTATGAGG                         GATACACATTGCCGAAGCTATATGCAAAGACGCAATACTGTGTCTCCTGTG
genomic: TGTGGAGCAGGCTGCTATTAGAGATGTTCAGGAAGCTAGCGTCTATGAGGgtatcatttc ... taattgacagGATACACATTGCCGAAGCTATATGCAAAGACGCAATACTGTGTCTCCTGTG
EST: gi|164155040|gb|ES191364.1|ES191364
EST:     GAGATGTTCAGGAAGCTAGCGTCTATGAGG                         GATACACATTGCCGAAGCTATATGCAAAGACGCAATACTGTGTCTCCTGTG
genomic: GAGATGTTCAGGAAGCTAGCGTCTATGAGGgtatcatttc ... taattgacagGATACACATTGCCGAAGCTATATGCAAAGACGCAATACTGTGTCTCCTGTG
EST: gi|164075227|gb|ES034599.1|ES034599
EST:     TGTGGAGCAGGCTGATATTAGAGATGTTCAGGAAGCTAGCGTCTATGAGG                         GATACACATTGCCGA
genomic: TGTGGAGCAGGCTGCTATTAGAGATGTTCAGGAAGCTAGCGTCTATGAGGgtatcatttc ... taattgacagGATACACATTGCCGA
EST: gi|47830262|gb|CK119946.1|CK119946
EST:     TGTGGAGCAGGCTGCTATTAGAGATGTTCAGGAAGCTAGCGTCTATGAGG                         GATACACATTGCCGAAGCTATATGCAAAGACGCAATACTGTGTCTCCTGTG
genomic: TGTGGAGCAGGCTGCTATTAGAGATGTTCAGGAAGCTAGCGTCTATGAGGgtatcatttc ... taattgacagGATACACATTGCCGAAGCTATATGCAAAGACGCAATACTGTGTCTCCTGTG
EST: gi|86036211|gb|DR331964.1|DR331964
EST:     TGTGGAGCAGGCTGCTATTAGAGATGTTCAGGAAGCTAGCGTCTATGAGG                         GATACACATTGCCGAAGCTATATGCAAAGACGCAATACTGTGTCTCCTGTG
genomic: TGTGGAGCAGGCTGCTATTAGAGATGTTCAGGAAGCTAGCGTCTATGAGGgtatcatttc ... taattgacagGATACACATTGCCGAAGCTATATGCAAAGACGCAATACTGTGTCTCCTGTG
EST: gi|86036204|gb|DR331957.1|DR331957
EST:     TGTGGAGCAGGCTGCTATTAGAGATGTTCAGGAAGCTAGCGTCTATGAGG                         GATACACATTGCCGAAGCTATATGCAAAGACGCAATACTGTGTCTCCTGTG
genomic: TGTGGAGCAGGCTGCTATTAGAGATGTTCAGGAAGCTAGCGTCTATGAGGgtatcatttc ... taattgacagGATACACATTGCCGAAGCTATATGCAAAGACGCAATACTGTGTCTCCTGTG
EST: gi|164014152|gb|ES116610.1|ES116610
EST:     CTGCTATTAGAGATGTTCAGGAAGCTAGCGTCTATGAGG                         GATACACATTGCCGAAGCTATATGCAAAGACGCAATACTGTGTCTCCTGT
genomic: CTGCTATTAGAGATGTTCAGGAAGCTAGCGTCTATGAGGgtatcatttc ... taattgacagGATACACATTGCCGAAGCTATATGCAAAGACGCAATACTGTGTCTCCTGT
EST: gi|125170231|gb|EL193822.1|EL193822
EST:     TATTAGAGATGTTCAGGAAGCTAGCGTCTATGAGG                         GATACACATTTGCCGAAGCTATATGCAAAGACGCAATACTGTGTCTCCTGT
genomic: TATTAGAGATGTTCAGGAAGCTAGCGTCTATGAGGgtatcatttc ... taattgacagGATACACA-TTGCCGAAGCTATATGCAAAGACGCAATACTGTGTCTCCTGT
EST: gi|86036199|gb|DR331952.1|DR331952
EST:     TGTGGAGCAGGCTGCTATTAGAGATGTTCAGGAAGCTAGCGTCTATGAGG                         GATACACATTGCCGAAGCTATATGCAAAGACGCAATACTGTGTCTCCTGTG
genomic: TGTGGAGCAGGCTGCTATTAGAGATGTTCAGGAAGCTAGCGTCTATGAGGgtatcatttc ... taattgacagGATACACATTGCCGAAGCTATATGCAAAGACGCAATACTGTGTCTCCTGTG
EST: gi|124856553|gb|EH940990.1|EH940990
EST:     TGTGGAGCAGGCTGCTATTAGAGATGTTCAGGAAGCTAGCGTCTATGAGG                         GATACACATTG
genomic: TGTGGAGCAGGCTGCTATTAGAGATGTTCAGGAAGCTAGCGTCTATGAGGgtatcatttc ... taattgacagGATACACATTG
EST: gi|86036208|gb|DR331961.1|DR331961
EST:     TGTGGAGCAGGCTGCTATTAGAGATGTTCAGGAAGCTAGCGTCTATGAGG                         GATACACATTGCCGAAGCTATATGCAAAGACGCAATACTGTGTCTCCTGTG
genomic: TGTGGAGCAGGCTGCTATTAGAGATGTTCAGGAAGCTAGCGTCTATGAGGgtatcatttc ... taattgacagGATACACATTGCCGAAGCTATATGCAAAGACGCAATACTGTGTCTCCTGTG
EST: gi|164009050|gb|ES076332.1|ES076332
EST:     GATGTTCAGGAAGCTAGCGTCTATGAGG                         GATACACATTGCCGAAGCTATATGCAAAGACGCAATACTGTGTCTCCTGTG
genomic: GATGTTCAGGAAGCTAGCGTCTATGAGGgtatcatttc ... taattgacagGATACACATTGCCGAAGCTATATGCAAAGACGCAATACTGTGTCTCCTGTG
EST: gi|125136640|gb|EL176670.1|EL176670
EST:     TGTGGAGCAGGCTGCTATTAGAGATGTTCAGGAAGCTAGCGTCTATGAGG                         GATACACATTGCCG
genomic: TGTGGAGCAGGCTGCTATTAGAGATGTTCAGGAAGCTAGCGTCTATGAGGgtatcatttc ... taattgacagGATACACATTGCCG
EST: gi|47828170|gb|CK117854.1|CK117854
EST:     TGTGGAGCAGGCTGCTATTAGAGATGTTCAGGAAGCTAGCGTCTATGAGG                         GATACACATTGCCGAAGCTATATGCAAAGACGCAATACTGTGTCTCCTGTG
genomic: TGTGGAGCAGGCTGCTATTAGAGATGTTCAGGAAGCTAGCGTCTATGAGGgtatcatttc ... taattgacagGATACACATTGCCGAAGCTATATGCAAAGACGCAATACTGTGTCTCCTGTG
EST: gi|86036202|gb|DR331955.1|DR331955
EST:     TGTGGAGCAGGCTGCTATTAGAGATGTTCAGGAAGCTAGCGTCTATGAGG                         GATACACATTGCCGAAGCTATATGCAAAGACGCAATACTGTGTCTCCTGTG
genomic: TGTGGAGCAGGCTGCTATTAGAGATGTTCAGGAAGCTAGCGTCTATGAGGgtatcatttc ... taattgacagGATACACATTGCCGAAGCTATATGCAAAGACGCAATACTGTGTCTCCTGTG
EST: gi|47831156|gb|CK120840.1|CK120840
EST:     TGTGGAGCAGGCTGCTATTAGAGATGTTCAGGAAGCTAGCGTCTATGAGG                         GATACACATTGCCGAAGCTATATGCAAAGACGCAATACTGTGTCTCCTGTG
genomic: TGTGGAGCAGGCTGCTATTAGAGATGTTCAGGAAGCTAGCGTCTATGAGGgtatcatttc ... taattgacagGATACACATTGCCGAAGCTATATGCAAAGACGCAATACTGTGTCTCCTGTG
EST: gi|164113468|gb|ES063720.1|ES063720
EST:     TGTGGAGCAGGCTGCTATTAGAGATGTTCAGGAAGCTAGCGTCTATGAGG                         GATACACATTGCCGAAGCTATATG
genomic: TGTGGAGCAGGCTGCTATTAGAGATGTTCAGGAAGCTAGCGTCTATGAGGgtatcatttc ... taattgacagGATACACATTGCCGAAGCTATATG
EST: gi|86036210|gb|DR331963.1|DR331963
EST:     TGTGGAGCAGGCTGCTATTAGAGATGTTCAGGAAGCTAGCGTCTATGAGG                         GATACACATTGCCGAAGCTATATGCAAAGACGCAATACTGTGTCTCCTGTG
genomic: TGTGGAGCAGGCTGCTATTAGAGATGTTCAGGAAGCTAGCGTCTATGAGGgtatcatttc ... taattgacagGATACACATTGCCGAAGCTATATGCAAAGACGCAATACTGTGTCTCCTGTG
EST: gi|86036200|gb|DR331953.1|DR331953
EST:     TGTGGAGCAGGCTGCTATTAGAGATGTTCAGGAAGCTAGCGTCTATGAGG                         GATACACATTGCCGAAGCTATATGCAAAGACGCAATACTGTGTCTCCTGTG
genomic: TGTGGAGCAGGCTGCTATTAGAGATGTTCAGGAAGCTAGCGTCTATGAGGgtatcatttc ... taattgacagGATACACATTGCCGAAGCTATATGCAAAGACGCAATACTGTGTCTCCTGTG
EST: gi|86078577|gb|DR374334.1|DR374334
EST:     TGTGGAGCAGGCTGCTATTAGAGATGTTCAGGAAGCTAGCGTCTATGAGG                         GATACACATTGCCGAAGCTATATGCAAAGACGCAATACTGTGTCTCCTGTG
genomic: TGTGGAGCAGGCTGCTATTAGAGATGTTCAGGAAGCTAGCGTCTATGAGGgtatcatttc ... taattgacagGATACACATTGCCGAAGCTATATGCAAAGACGCAATACTGTGTCTCCTGTG
EST: gi|125055340|gb|EL125611.1|EL125611
EST:     TGTGGAGCAGGCTGCTATTAGAGATGTTCAGGAAGCCAGCGTCTATGAGG                         GATACACATTGCCGAAGCTATAT
genomic: TGTGGAGCAGGCTGCTATTAGAGATGTTCAGGAAGCTAGCGTCTATGAGGgtatcatttc ... taattgacagGATACACATTGCCGAAGCTATAT
EST: gi|47831171|gb|CK120855.1|CK120855
EST:     TGTGGAGCAGGCTGCTATTAGAGATGTTCAGGAAGCTAGCGTCTATGAGG                         GATACACATTGCCGAAGCTATATGCAAAGACGCAATACTGTGTCTCCTGTG
genomic: TGTGGAGCAGGCTGCTATTAGAGATGTTCAGGAAGCTAGCGTCTATGAGGgtatcatttc ... taattgacagGATACACATTGCCGAAGCTATATGCAAAGACGCAATACTGTGTCTCCTGTG
EST: gi|86036209|gb|DR331962.1|DR331962
EST:     TGTGGAGCAGGCTGCTATTAGAGATGTTCAGGAAGCTAGCGTCTATGAGG                         GATACACATTGCCGAAGCTATATGCAAAGACGCAATACTGTGTCTCCTGTG
genomic: TGTGGAGCAGGCTGCTATTAGAGATGTTCAGGAAGCTAGCGTCTATGAGGgtatcatttc ... taattgacagGATACACATTGCCGAAGCTATATGCAAAGACGCAATACTGTGTCTCCTGTG
EST: gi|164022803|gb|ES146969.1|ES146969
EST:     TGTGGAGCAGGCTGCTATTAGAGATGTTCAGGAAGCTAGCGTCTATGAGG                         GATACACATTGCCGAAGCTATATGCAAAGAC
genomic: TGTGGAGCAGGCTGCTATTAGAGATGTTCAGGAAGCTAGCGTCTATGAGGgtatcatttc ... taattgacagGATACACATTGCCGAAGCTATATGCAAAGAC
EST: gi|125188314|gb|EL203268.1|EL203268
EST:     TGTGGAGCAGGCTGCTATTAGAGATGTTCAGGAAGCTAGCGTCTATGAGG                         GATACACATTGCCGAAGCTATATGCAAAGAC
genomic: TGTGGAGCAGGCTGCTATTAGAGATGTTCAGGAAGCTAGCGTCTATGAGGgtatcatttc ... taattgacagGATACACATTGCCGAAGCTATATGCAAAGAC
EST: gi|86036201|gb|DR331954.1|DR331954
EST:     TGTGGAGCAGGCTGCTATTAGAGATGTTCAGGAAGCTAGCGTCTATGAGG                         GATACACATTGCCGAAGCTATATGCAAAGACGCAATACTGTGTCTCCTGTG
genomic: TGTGGAGCAGGCTGCTATTAGAGATGTTCAGGAAGCTAGCGTCTATGAGGgtatcatttc ... taattgacagGATACACATTGCCGAAGCTATATGCAAAGACGCAATACTGTGTCTCCTGTG

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
GACAAGGCCATTAAGAGGTTCATTGTGAGGAACATTGTGGAGCAGGCTGCTATTAGAGATGTTCAGGAAGCTAGCGTCTATGAGGgtatcatttcattcctctcttttatgtttctttgacctttgttataattctacattataaagtttggatttttagactattggtattgagaaagtttggatttttcgactattggcattgaagtttactgagatctgtaacttgattgaatcatgtaattgacag

- - - - - - - - - - - - - - - - - - GTGGAG
- - - - - - - - - - - - - - - - - - - GGAGCA
- - - - - - - - - - - - - - - - - - -  GAGCAG
- - - - - - - - - - - - - - - - - - - - - -  GCTGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - -  GAGATG