1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
TCTAGTGATCCGGTCATTGCTTTCTTGCTGGATGAAGTTGTTGTCAAGGATTGGGTCAAGCGTACATTCCGGAGCACCTTAGCTGAACTTCAAGAAATCTgtatccttttagctgttaatatttttatgtttcttaagactgtatatttgtgcaccgtaaggtctgtctatctttaatattggccctcag
species | Arabidopsis thaliana |
transcript | AT2G39810.1 |
intron # | 3 |
splice site | 5' |
intron type | U12 (go to U12 genes for details) |
EST: TTGGGTCAAGCGTACATTCCGGAGCACCTTAGCTGAACT-CAAGAAATCT ATAATCTTGAAACAAAAGAGATGCAAGCGTGGGTAGATAAACTCCTEST: gi|116394342|gb|EG436934.1|EG436934
genomic: TTGGGTCAAGCGTACATTCCGGAGCACCTTAGCTGAACTTCAAGAAATCTgtatcctttt ... tggccctcagATAATCTTGAAACAAAAGAGATGCAAGCGTGGTTAGATAAACTCCT
EST: TTGGGTCAAGCGTACATTCCGGAGCACCTTAGCTGAACTTCAAGAAATCT ATAATCTTGAAACAAAAGAGATGCAAGCGTGGTTAGATAAACTCCTAAGGTEST: gi|116394352|gb|EG436944.1|EG436944
genomic: TTGGGTCAAGCGTACATTCCGGAGCACCTTAGCTGAACTTCAAGAAATCTgtatcctttt ... tggccctcagATAATCTTGAAACAAAAGAGATGCAAGCGTGGTTAGATAAACTCCTAAGGT
EST: TTGGGTCAAGCGTACATTCCGGAGCACCTTAGCTGAACTTCAAGAAATCT ATAATCTTGAAACAAAAGAGATGCAAGCGTGGTTAGATAAACTCCTAAGGTEST: gi|116394338|gb|EG436930.1|EG436930
genomic: TTGGGTCAAGCGTACATTCCGGAGCACCTTAGCTGAACTTCAAGAAATCTgtatcctttt ... tggccctcagATAATCTTGAAACAAAAGAGATGCAAGCGTGGTTAGATAAACTCCTAAGGT
EST: TTGGGTCAAGCGTACATTCCGGAGCACCTTAGCTGAACTTCAAGAAATCT ATAATCTTGAAACAAAAGAGATGCAAGCGTGGTTAGATAAACTCCTAAGGTEST: gi|116394335|gb|EG436927.1|EG436927
genomic: TTGGGTCAAGCGTACATTCCGGAGCACCTTAGCTGAACTTCAAGAAATCTgtatcctttt ... tggccctcagATAATCTTGAAACAAAAGAGATGCAAGCGTGGTTAGATAAACTCCTAAGGT
EST: TAGCTGAACTCCAAGAAATCT ATAATCTTGAAACAAAAGAGATGCAAGCGTGGTTAGATAAACTCCTAAGGT
genomic: TAGCTGAACTTCAAGAAATCTgtatcctttt ... tggccctcagATAATCTTGAAACAAAAGAGATGCAAGCGTGGTTAGATAAACTCCTAAGGT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TCTAGTGATCCGGTCATTGCTTTCTTGCTGGATGAAGTTGTTGTCAAGGATTGGGTCAAGCGTACATTCCGGAGCACCTTAGCTGAACTTCAAGAAATCTgtatccttttagctgttaatatttttatgtttcttaagactgtatatttgtgcaccgtaaggtctgtctatctttaatattggccctcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA