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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTTGACTGGATTGGTCAGAAGAATCAGATAGACGCTGgtttgtattcatcatctctgttgtatgtgtgtttagcggaggtgttgatgatgatggattgtcgtttgttgtaacag

Basic information

species Arabidopsis thaliana
transcript AT2G37660.1
intron # 3
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|86076409|gb|DR372166.1|DR372166
EST:     GTTGACTGGATTGGTCAGAAGAATCAGATAGACGCTG                         CTAAGGCTGCAGGAGTTAAGCAGATTGTTTTGGTTGGGTCGATGGGAGGAA
genomic: GTTGACTGGATTGGTCAGAAGAATCAGATAGACGCTGgtttgtattc ... gttgtaacagCTAAGGCTGCAGGAGTTAAGCAGATTGTTTTGGTTGGGTCGATGGGAGGAA
EST: gi|124759379|gb|EH849509.1|EH849509
EST:     GTTGACTGGATTGGTCAGAAGAATCAGATAGACGCTG                         CTAAGGCTGCAGGA
genomic: GTTGACTGGATTGGTCAGAAGAATCAGATAGACGCTGgtttgtattc ... gttgtaacagCTAAGGCTGCAGGA
EST: gi|125212043|gb|EL226997.1|EL226997
EST:     TTGACTGGATTGGTCAGAAAGAATCAGATAGACGCTG                         CTAAGGCTGCAGGAGTTAAGCAGTATTGTTTTGGTTGGGTCGATGGGAGGA
genomic: TTGACTGGATTGGTCAG-AAGAATCAGATAGACGCTGgtttgtattc ... gttgtaacagCTAAGGCTGCAGGAGTTAAGCAG-ATTGTTTTGGTTGGGTCGATGGGAGGA
EST: gi|164015236|gb|ES207873.1|ES207873
EST:     GTTGACTGGATTGGTCAGAAGAATCAGATAGACGCTG                         CTAAGGCTGCAGGAGTTAAGCAGATTGTTTTGGTTGGGTCGATGGGAGG
genomic: GTTGACTGGATTGGTCAGAAGAATCAGATAGACGCTGgtttgtattc ... gttgtaacagCTAAGGCTGCAGGAGTTAAGCAGATTGTTTTGGTTGGGTCGATGGGAGG
EST: gi|163986862|gb|ES114616.1|ES114616
EST:     TTGGTCAGAAGAATCAGATAGACGCTG                         CTAAGGCTGCAGGAGTTAAGCAGATTGTTTTGGTTGGGTCGATGGGAGGAA
genomic: TTGGTCAGAAGAATCAGATAGACGCTGgtttgtattc ... gttgtaacagCTAAGGCTGCAGGAGTTAAGCAGATTGTTTTGGTTGGGTCGATGGGAGGAA
EST: gi|124847010|gb|EH931447.1|EH931447
EST:     CAGATAGACGCTG                         CTAAGGCTGCAGGAGTTAAGCAGATTGTTTTGGTTGGGTCGATGGGAGGAA
genomic: CAGATAGACGCTGgtttgtattc ... gttgtaacagCTAAGGCTGCAGGAGTTAAGCAGATTGTTTTGGTTGGGTCGATGGGAGGAA
EST: gi|47831378|gb|CK121062.1|CK121062
EST:     GTTGACTGGATTGGTCAGAAGAATCAGATAGACGCTG                         TTAAGGCTGCAGGAGTTAAGCAGATTGTTTTGGTTGGGTCGATGGGAGGAA
genomic: GTTGACTGGATTGGTCAGAAGAATCAGATAGACGCTGgtttgtattc ... gttgtaacagCTAAGGCTGCAGGAGTTAAGCAGATTGTTTTGGTTGGGTCGATGGGAGGAA
EST: gi|125292958|gb|EL307043.1|EL307043
EST:     CAGATAGACGCTG                         CTAAGGCTGCAGGAGTTAAGCAGATTGTTTTGGTTGGGTCGATGGGAGGAA
genomic: CAGATAGACGCTGgtttgtattc ... gttgtaacagCTAAGGCTGCAGGAGTTAAGCAGATTGTTTTGGTTGGGTCGATGGGAGGAA
EST: gi|124959188|gb|EL033892.1|EL033892
EST:     AACAGGTTAGACTGGATTGGTCAGAAGAATCAGATAGACGCTG                         CTAAGGCTGCAGGAGTTAAGCAGATTGTTTTGGTTGGGTCGATGGGAGGAA
genomic: AACAGGTT-GACTGGATTGGTCAGAAGAATCAGATAGACGCTGgtttgtattc ... gttgtaacagCTAAGGCTGCAGGAGTTAAGCAGATTGTTTTGGTTGGGTCGATGGGAGGAA
EST: gi|125261050|gb|EL275135.1|EL275135
EST:     TCAGATAGACGCTG                         CTAAGGCTGCAGGAGTTAAGCAGATTGTTTTGGTTGGGTCGATGGGAGGAA
genomic: TCAGATAGACGCTGgtttgtattc ... gttgtaacagCTAAGGCTGCAGGAGTTAAGCAGATTGTTTTGGTTGGGTCGATGGGAGGAA