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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AGTTGATGGCTGTCAGGATCGTCAAGCATGCCATGGAGATTATCCACCTCTTGTCTGACTTGAACCCGATTCAAGTTATCATTGATGCCATTGTTAACAGgtatattaagattgctatactgaaacctgtaaaattcttgcgtgcttgttactatgaactgaatctaattaagaaggtttgttctttatgtgaattag

Basic information

species Arabidopsis thaliana
transcript AT2G37270.1
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT2G37270.1 (Arabidopsis thaliana), 5'ss of exon 3
lower sequence: LOC_Os01g01060.1 (Oryza sativa), 5'ss of exon 2
AGTTGATGGCTGTCAGGATCGTCAAGCATGCCATGGAGATTATCCACCTCTTGTCTGACTTGAACCCGATTCAAGTTATCATTGATGCCATTGTTAACAGgtatattaagattgctatactgaaacctgtaaaattcttgcgtgcttgttactatgaactgaatctaattaagaaggtttgttct-ttatgtgaattag-----
|| | ||||||||| | ||||||||||| ||||||||||| ||||||||| |  | |||   ||||| || || || ||| | ||||||||  | ||||||||    |   |     | |  |  ||| | |  | |   | |   |  | | ||  |||   | |  | ||  |   |    || |||| || |   |     
AGATCATGGCTGTCCGCATCGTCAAGCACGCCATGGAGATCATCCACCTCCTCACCGACGCCAACCCCATCCAGGTCATCGTAGATGCCATCATCAACAGgtac--caccgtccaattcccaattcctttcagttgcgcacttcaattgtccaattcacttttttt--tcaatcaccctcaccctcttatatgcaaatgcttat

upper sequence: AT2G37270.1 (Arabidopsis thaliana), 5'ss of exon 3
lower sequence: LOC_Os11g29190.4 (Oryza sativa), 5'ss of exon 2
--------------------------AGTTGATGGCTGTCAGGATCGTCAAGCATGCCATGGAGATTATCCACCTCTTGTCTGACTTGAACCCGATTCAAGTTATCATTGATGCCATTGTTAACAGgtatattaagattgctatactgaaacctgtaaaattcttgcgtgcttgttactatgaactgaatctaattaagaaggtttgttctttatgtgaattag
                          || | ||||| ||  | ||||||||||| ||||||||||| ||||||||| |  | |||   ||||| ||||| || ||| | || |||||  | |||||||| |       |      ||     |    ||  |||| ||  |  || |   |  || |    |  |||  |                        
GATGCACGGCCGCAACAACGGGAAGAAGATCATGGCCGTGCGCATCGTCAAGCACGCCATGGAGATCATCCACCTCCTCACCGACGCCAACCCCATTCAGgtcatcgtcgacgccatcatcaacaggta-accccccctttcgcgcttcgctcgcccaatctctttcgaaccagtaaaattttaccgggatttgttagaac-----------------------

upper sequence: AT2G37270.1 (Arabidopsis thaliana), 5'ss of exon 3
lower sequence: LOC_Os11g29190.5 (Oryza sativa), 5'ss of exon 2
-----------------------------------------AGTTGATGGCTGTCAGGATCGTCAAGCATGCCATGGAGATTATCCACCTCTTGTCTGACTTGAACCCGATTCAAGTTATCATTGATGCCATTGTTAACAGgtatattaagattgctatactgaaacctgtaaaattcttgcgtgcttgttactatgaactgaatctaattaagaaggtttgttctttatgtgaattag
                                         || | ||||| ||  | ||||||||||| ||||||||||| ||||||||| |  | |||   ||||| ||||| || ||| | || |||||  | |||||||| |       |      ||     |    ||  |||| ||  |  || |   |  ||                                       
GACCAACTCGCTCATGATGCACGGCCGCAACAACGGGAAGAAGATCATGGCCGTGCGCATCGTCAAGCACGCCATGGAGATCATCCACCTCCTCACCGACgccaaccccattcaggtcatcgtcgacgccatcatcaacaggta-accccccctttcgcgcttcgctcgcccaatctctttcgaaccagtaaaattttacc--------------------------------------

upper sequence: AT2G37270.1 (Arabidopsis thaliana), 5'ss of exon 3
lower sequence: LOC_Os11g29190.1 (Oryza sativa), 5'ss of exon 2
AGTTGATGGCTGTCAGGATCGTCAAGCATGCCATGGAGATTATCCACCTCTTGTCTGACTTGAACCCGATTCAAGTTATCATTGATGCCATTGTTAACAGgtatattaagattgctatactgaaacctgtaaaattcttgcgtgcttgttactatgaactgaatctaattaagaaggtttgt---tctttatgtga-attag
|| | ||||| ||  | ||||||||||| ||||||||||| ||||||||| |  | |||   ||||| ||||| || ||| | || |||||  | |||||||| |       |      ||     |    ||  |||| ||  |  || |   |  || |    |  |||  |             ||||| ||| | || 
AGATCATGGCCGTGCGCATCGTCAAGCACGCCATGGAGATCATCCACCTCCTCACCGACGCCAACCCCATTCAGGTCATCGTCGACGCCATCATCAACAGgta-accccccctttcgcgcttcgctcgcccaatctctttcgaaccagtaaaattttaccgggatttgttagaacaccacacgagaatttatctgagaata-

upper sequence: AT2G37270.1 (Arabidopsis thaliana), 5'ss of exon 3
lower sequence: GLYMA12G32850.1 (Glycine max), 5'ss of exon 3
AGTTGATGGCTGTCAGGATCGTCAAGCATGCCATGGAGATTATCCACCTCTTGTCTGACTTGAACCCGATTCAAGTTATCATTGATGCCATTGTTAACAGgtatattaagattgctatactgaaacctgtaaaattcttgcgtgcttgttactatgaactgaatctaattaagaaggtttgttctttatgtgaattag--------
|  |  ||||||| |||||| |||||||||| ||||||||||| ||  | ||| |||||  |||||| ||||| |||||  |||||||  |  | |||||||||     || |  | || | |    | || |  |      || |  | |||| |   |  ||  ||| ||||  | |       |||   |   ||        
AACTCTTGGCTGTTAGGATCATCAAGCATGCTATGGAGATTATTCATTTGTTGACTGACCAGAACCCCATTCAGGTTATTGTTGATGCTGTCATCAACAGgtat-----gacttttgtattcatggtt-tatatctagatgatgatgatgactaggccttttatagaataaagattggtatagtactatagtagaaagtccagtaa

upper sequence: AT2G37270.1 (Arabidopsis thaliana), 5'ss of exon 3
lower sequence: PP1S10_385V6.1 (Physcomitrella patens), 5'ss of exon 2
AGTTGATGGCTGTCAGGATCGTCAAGCATGCCATGGAGATTATCCACCTCTTGTCTGACTTGAACCCGATTCAAGTTATCATTGATGCCATTGTTAACAGgtatat-taagat----tgctatactgaa-acctgtaaaattcttgcgtgcttgttactatgaactg--aatctaattaagaaggtttgt-tctttatgtgaattag--
|||||||||||||| | || || ||||| ||||||||||||||||| ||| || |||||  |||||| ||||| || ||| | ||||| ||| | |||||||         ||    ||  |||  ||| | |   |  |  |     |  || | | ||   | ||  ||| |   |  ||  |   || | ||    |  |||    
AGTTGATGGCTGTCCGCATTGTGAAGCACGCCATGGAGATTATCCATCTCCTGACTGACCAGAACCCCATTCAGGTCATCGTCGATGCTATTATCAACAGgttcggacgcaatcccgtgtgatatcgaacatcctgaggacacaattctttttctgattaaatattgtcaatttgtctctgagcgacagtgttttcccatacattgcag

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|124712284|gb|EH803686.1|EH803686
EST:     TTGTCTGACTTGAACCCGATTCAAGTTATCATTGATGCCATTGTTAACAG                         TGGTCCACGTGAAGATGCTACCAGGAT
genomic: TTGTCTGACTTGAACCCGATTCAAGTTATCATTGATGCCATTGTTAACAGgtatattaag ... tgtgaattagTGGTCCACGTGAAGATGCTACCAGGAT
EST: gi|164019347|gb|ES207687.1|ES207687
EST:     TTGTCTGACTTGAACCCGATTCAAGTTATCATTGATGCCATTGTTAACAG                         TGGTCCACGTGAAGATGCTACCAAGGATTGGATC
genomic: TTGTCTGACTTGAACCCGATTCAAGTTATCATTGATGCCATTGTTAACAGgtatattaag ... tgtgaattagTGGTCCACGTGAAGATGCTACCA-GGATTGGATC
EST: gi|125094539|gb|EL151997.1|EL151997
EST:     TTGTCTGACTTGAACCCGATTCAAGTTATCATTGATGCCATTGTTAACAG                         TGGTCCACGTGAAGATGCTACCAG
genomic: TTGTCTGACTTGAACCCGATTCAAGTTATCATTGATGCCATTGTTAACAGgtatattaag ... tgtgaattagTGGTCCACGTGAAGATGCTACCAG
EST: gi|125286331|gb|EL300416.1|EL300416
EST:     TTG-CTGACTTGAACCCGATTCAAGTTATCATTGATGCCATTGTTAACAG                         TGGTCCACGTGAAGATGCTACC
genomic: TTGTCTGACTTGAACCCGATTCAAGTTATCATTGATGCCATTGTTAACAGgtatattaag ... tgtgaattagTGGTCCACGTGAAGATGCTACC
EST: gi|86075624|gb|DR371381.1|DR371381
EST:     TTGTCTGACTTGAACCCGATTCAAGTTATCATTGATGCCATTGTTAACAG                         TGGTCCACGTGAAGATGCTACCAGGATTGGATCTGCTGGTGTGGTTAGGAG
genomic: TTGTCTGACTTGAACCCGATTCAAGTTATCATTGATGCCATTGTTAACAGgtatattaag ... tgtgaattagTGGTCCACGTGAAGATGCTACCAGGATTGGATCTGCTGGTGTGGTTAGGAG
EST: gi|301501481|gb|HO207021.1|HO207021
EST:     TATCATTGCTGCCATTGTTAACAG                         TGGTCCACGTGAAGATGCTACCAGGATTGGATCTGCTGGTGTGGTTAGGAG
genomic: TATCATTGATGCCATTGTTAACAGgtatattaag ... tgtgaattagTGGTCCACGTGAAGATGCTACCAGGATTGGATCTGCTGGTGTGGTTAGGAG
EST: gi|86081297|gb|DR377054.1|DR377054
EST:     TTGTCTGACTTGAACCCGATTCAAGTTATCATTGATGCCATTGTTAACAG                         TGGTCCACGTGAAGATGCTACCAGGATTGGATCTGCTGGTGTGGTTAGGAG
genomic: TTGTCTGACTTGAACCCGATTCAAGTTATCATTGATGCCATTGTTAACAGgtatattaag ... tgtgaattagTGGTCCACGTGAAGATGCTACCAGGATTGGATCTGCTGGTGTGGTTAGGAG