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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGTGGATGAGCTTAGGAAGCTTCTCTCTGACAAGGATGCGTATCAACAGTTTCTGCACTCGCTTGACCAGGTCACTATTCAAAACAATgtaagtgggaaacatgatgtaaaaatcatctattgtcttaagaaatgtagcttcttcattatttacgtttttgagatgattcagttttgtgctttttctttatatgttcattag

Basic information

species Arabidopsis thaliana
transcript AT2G36680.2
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT2G36680.1 (Arabidopsis thaliana), 5'ss of exon 3
lower sequence: GLYMA03G34540.1 (Glycine max), 5'ss of exon 3
TGTGGATGAGCTTAGGAAGCTTCTCTCTGACAAGGATGCGTATCAACAGTTTCTGCACTCGCTTGACCAGGTCACTATTCAAAACAATgtaagtgggaaacatgatgtaaaaatcatctattgtcttaagaaatgtagcttcttcattatttacgtttttgagatgattcagttttgtgctttttctttatatgttcattag
||| |||||| |  |||||||| | |||||||| |||||||||||||||||| |||| |||||||| |||||||  |||||||| |||||||||      |||    | |      |||| | |||   ||  | |  | |    | |  |    |||||  |       |   |  |   | || | |||     ||    
TGTTGATGAGTTGCGGAAGCTTTTATCTGACAAAGATGCGTATCAACAGTTTTTGCATTCGCTTGATCAGGTCAAGATTCAAAATAATgtaagttt----catttctttac-----tctaatttctagtgatttattaccttggaactggtattttttttttggaaggcgaagataata--tattatatatgaaaccaa---

upper sequence: AT2G36680.1 (Arabidopsis thaliana), 5'ss of exon 3
lower sequence: GLYMA19G37230.1 (Glycine max), 5'ss of exon 3
TGTGGATGAGCTTAGGAAGCTTCTCTCTGACAAGGATGCGTATCAACAGTTTCTGCACTCGCTTGACCAGGTCACTATTCAAAACAATgtaagtgggaaacatgatgtaaaaatcatctattgtcttaagaaatgtagcttcttcattatttacgtttttgagatgattcagttttgtgctttttctttatatgttcattag
||| |||||| |  |||||||| | |||||||| |||||||||||||||||| |||| || ||||| |||||||  |||||||  |||||||||   | |  |    ||      | ||| | | ||| |   | || || ||   ||   |    |||   | || |  |  |||    || |||| |||    |      
TGTTGATGAGTTGCGGAAGCTTTTATCTGACAAAGATGCGTATCAACAGTTTTTGCATTCACTTGATCAGGTCAAGATTCAAACTAATgtaagtttcatatctttactatctcagaactagtatgttatg---tttacctgctgagtttgctgaaattt---gttggtcga--tttcaaattcttctctatggagt------

upper sequence: AT2G36680.1 (Arabidopsis thaliana), 5'ss of exon 3
lower sequence: GLYMA20G19470.1 (Glycine max), 5'ss of exon 2
TGTGGATGAGCTTAGGAAGCTTCTCTCTGACAAGGATGCGTATCAACAGTTTCTGCACTCGCTTGACCAGGTCACTATTCAAAACAATgtaagtgggaaacatgatgtaaaaatcatctattgtcttaagaaatgtagcttcttcattatttacgttt-ttgagatgattcagttttgtgctttttctttatatgttcattag---
||| |||||| |   |||| || | |||||||| |||||||||||||| ||| |||| |||||||| |||||||  |||||||  |||||||||             |  | ||| | || | ||| |   |||||| ||  |   |||| |    ||  |||| |  || | |||| |  | || || ||||   |  | ||   
TGTTGATGAGTTGCAGAAGTTTTTATCTGACAAAGATGCGTATCAACAATTTTTGCATTCGCTTGATCAGGTCAACATTCAAACTAATgtaagt-------------ttcatatc-tttactatctcag--aatgtaactagtatgttatgtttacttgctgagtttgttgaatttttt--tgttcctatatactgtactgagatg