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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TTCAACATCCTTCCAATAATGCTTGGAGACCTCAACGTGGTCTCCCAGAACGAGCCGTCTCAGTTCTCCGTGCTTGGCTCTTCGAACACTTTCTTCATCCgtaagtaacccactatacacacatgcactacttttcatcactggaacacaaactcagtctctaagttgtctttcttttaattag

Basic information

species Arabidopsis thaliana
transcript AT2G35940.2
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT2G35940.2 (Arabidopsis thaliana), 5'ss of exon 3
lower sequence: LOC_Os12g06340.2 (Oryza sativa), 5'ss of exon 3
TTCAACATCCTTCCAATAATGCTTGGAGACCTCAACGTGGTCTCCCAGAACGAGCCGTCTCAGTTCTCCGTGCTTGGCTCTTCGAACACTTTCTTCATCCgtaagtaacccactatacacacatgcactacttttcatcactggaacacaaactcagtctctaagttgtctttcttttaattag----------------
         |  ||      |  ||| | || || ||||| ||||| || || |||||||| || ||||| |||||||||||||| || || || || |||||||||| | | | |  |    |  | |     |    | | ||            | ||| | ||  |||| ||  ||  ||                
CGGTGGGCGCCGCCGGCGGCGGGTGGCGGCCGCAGCGTGGCCTCCCCGAGCGCGCCGTCTCCGTCCTCCGCGCTTGGCTCTTCGAGCATTTCCTCCACCCgtaagtaatcaaattttgaattttaaaatttaaatttgtagttgatttttggggttttttcttattttccttttttaaaacaagccttagtttttaagcc

upper sequence: AT2G35940.2 (Arabidopsis thaliana), 5'ss of exon 3
lower sequence: GLYMA10G10040.1 (Glycine max), 5'ss of exon 4
TTCAACATCCTTC-CAATAATGCTTGGAGACCTCAACGTGGTCTCCCAGAACGAGCCGTCTCAGTTCTCCGTGCTTGGCTCTTCGAACACTTTCTTCATCCgtaagta-acccactata-cacacatgcactacttttcatcactggaacacaaa----ctcagtctctaagttgtctttcttttaattag----------
 |    ||  | |   | |||||||||||||| ||  | ||  | |||||  || | || || ||||| |||||||||||||| |||||||||||||||||||||| | |||||  ||  ||    |     |  |||      || ||    ||    ||  || |  || |    |   |||   || |          
-TGGGAATGATCCATCACAATGCTTGGAGACCCCAGAGAGGATTGCCAGAGAGATCGGTTTCTGTTCTGCGTGCTTGGCTCTTTGAACACTTTCTTCATCCgtaaggatacccaaaatctcatcttttttggaaattttgattttgtaatttgaaggttctttgtgttgaaatgacttgagtttggttttggttttttcag

upper sequence: AT2G35940.2 (Arabidopsis thaliana), 5'ss of exon 3
lower sequence: GLYMA19G38690.1 (Glycine max), 5'ss of exon 6
TTCAACATCCTTCCA-ATAATGCTTGGAGACCTCAACGTGGTCTCCCAGAACGAGCCGTCTCAGTTCTCCGTGCTTGGCTCTTCGAACACTTTCTTCATCCgtaagta-acccactatacacacatgcactacttttcatcactggaacacaaactcagtctctaagttgtctttcttttaattag----------------
 |    ||  | |   | |||||||||||||| ||  | ||  | || ||| || |||| || ||||| ||||||||||||||||||||||| || |||||||||| | ||  |   |||  | ||| | ||    |  |  |       | || | |   | || ||  || |  ||| || ||                 
-TGGGAATGATCCAGCACAATGCTTGGAGACCCCAGAGAGGATTGCCTGAAAGATCCGTTTCTGTTCTTCGTGCTTGGCTCTTCGAACACTTCCTCCATCCgtaagcacacttaacttacttaaatgtaatatacattcttccattttttctaatttataattta-gtcatcctattttaaaataaaattttttagttctct

upper sequence: AT2G35940.2 (Arabidopsis thaliana), 5'ss of exon 3
lower sequence: GLYMA02G35450.3 (Glycine max), 5'ss of exon 3
TTCAACATCCTTC-CAATAATGCTTGGAGACCTCAACGTGGTCTCCCAGAACGAGCCGTCTCAGTTCTCCGTGCTTGGCTCTTCGAACACTTTCTTCATCCgtaagta-acccactatacacacatgcactact-tttcatcactggaacacaaactcagtctc--taagttgtctttc-ttttaattag
 |    ||  |     | |||||||||||||| ||  | ||  | || ||  || | || || ||||| |||||||||||||| ||||||||||| || ||||||| | |||||  || | ||  |    || | |||  | | | |||       |  ||     | | |||  |||  ||||  | ||
-TGGGAATGATCAATCACAATGCTTGGAGACCCCAGAGAGGATTGCCTGAGAGATCGGTTTCTGTTCTGCGTGCTTGGCTCTTTGAACACTTTCTCCACCCgtaaggacacccaaaat-ctcattttttttaatattttgtaagttgaaggttctttgtgttgaaatgacttgagtttggtttttttcag

upper sequence: AT2G35940.2 (Arabidopsis thaliana), 5'ss of exon 3
lower sequence: GLYMA03G36070.1 (Glycine max), 5'ss of exon 4
TTCAACATCCTTCCA-ATAATGCTTGGAGACCTCAACGTGGTCTCCCAGAACGAGCCGTCTCAGTTCTCCGTGCTTGGCTCTTCGAACACTTTCTTCATCCgtaagta-acccac-tatacacacatgcactactttt-catcactggaacacaa--actcagtctctaagttgtctttcttttaattag---------------------------------------------------------------
 |    ||  | |   | |||||||||||||| ||  | ||  | || ||| || |||| || ||||| ||||||||||||||||||||||| || || ||||||| | ||  || | || | |  | | ||  ||||   | | |       ||  | | |      |||||  |    |||||| |                                                                 
-TGGGAATGATCCAGCACAATGCTTGGAGACCCCAGAGAGGATTGCCTGAAAGATCCGTTTCTGTTCTTCGTGCTTGGCTCTTCGAACACTTCCTCCACCCgtaagcacacttacatttataaaagttctctctttttattttattctcttgtaagtaattatggaaaaagtttacaacattttaaatgtttactgttaatttaattcaaagataatacatgttgtgctgaaataactttgtttggatttcag