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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATTCCACAAAATGGGAAGAGAAAAAGTTATTCTCATAGATTCTGTCTTGCCTTTTGGTTACGAGCTACTTATGTGTGACACTGACATGGTGTGGCTTAAGgtgctaattcgacagattattatcactgttattcatcacgttatcttccttaatagactttcttctgataatttatatgtgacag

Basic information

species Arabidopsis thaliana
transcript AT2G35610.1
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT2G35610.1 (Arabidopsis thaliana), 5'ss of exon 3
lower sequence: GLYMA16G08350.2 (Glycine max), 5'ss of exon 3
ATTCCACAAAATGGGAAGAGAAAAAGTTATTCTCATAGATTCTGTCTTGCCTTTTGGTTACGAGCTACTTATGTGTGACACTGACATGGTGTGGCTTAAGgtgctaat----tcgacagattatt-----atcactgttattcatcacgttatcttccttaatagactttctt--ctgataatttat-atgtgacag---
||| || |||||||| ||||||||||||||||| ||||| ||  |  |||||||||||| ||||||  | |||||||| ||||||||||| ||| | |||||| || |    |   || ||  ||     | |    || ||       |||   |  || |||| |||  ||   |  | ||| || || ||| ||   
ATTTCATAAAATGGGGAGAGAAAAAGTTATTCTGATAGACTCAATACTGCCTTTTGGTTTCGAGCTGTTGATGTGTGATACTGACATGGTTTGGTTGAAGgtgatattcatttttgcacatgctttcttgagccaatttgtttgaattattaggatggttcataggcttggttagattttgattaatgatctgaaagaat

upper sequence: AT2G35610.1 (Arabidopsis thaliana), 5'ss of exon 3
lower sequence: GLYMA16G20730.1 (Glycine max), 5'ss of exon 4
ATTCCACAAAATGGGAAGAGAAAAAGTTATTCTCATAGATTCTGTCTTGCCTTTTGGTTACGAGCTACTTATGTGTGACACTGACATGGTGTGGCTTAAGgtgctaat----tcgacagattattatcactgtta-ttcatcacg-ttat---cttccttaatagacttt-----cttctgataatttatatgtgacag-
||| || |||||||| ||||||||||||||||| ||||| ||  |  |||||||||||| ||||||  | |||||||| ||||||||||| ||| | |||||| || |    |  ||| ||  ||   |  || | ||  |  |  ||||     |  ||  ||| |||       || |||| ||| || ||  | |  
ATTTCATAAAATGGGGAGAGAAAAAGTTATTCTGATAGACTCAATACTGCCTTTTGGTTTCGAGCTGTTGATGTGTGATACTGACATGGTTTGGTTGAAGgtgatattcatttttacacatgctttctagagtcaatttgtttcaattatgaggatgattcgtaggcttggttagattttgattattgatctgaaagaag

upper sequence: AT2G35610.1 (Arabidopsis thaliana), 5'ss of exon 3
lower sequence: GLYMA11G09650.1 (Glycine max), 5'ss of exon 2
ATTCCACAAAATGGGAAGAGAAAAAGTTATTCTCATAGATTCTGTCTTGCCTTTTGGTTACGAGCTACTTATGTGTGACACTGACATGGTGTGGCTTAAGgtgct-------aattcgacagattattatcactgttattcatcacgttatcttccttaatagactttcttctg---ataatttatatgtgacag-----
||| || |||||||| |||||||||||| |||| ||  | |   | |||||||||||||| |||||| | |||||||||||||||||||| ||| | ||||| |        | |||   | |  | | |   |  ||||  | | | |   |    |  |||  ||  || |    || ||  | || | | |      
ATTTCATAAAATGGGGAGAGAAAAAGTTCTTCTGATCAACTTGATATTGCCTTTTGGTTATGAGCTATTGATGTGTGACACTGACATGGTTTGGTTGAAGgtacctttctccatttctcaatacaagtttagtttatatttttaagggtgattcatatgctagctttgtttttatgaatcatccaaattttaaaaggagc

upper sequence: AT2G35610.1 (Arabidopsis thaliana), 5'ss of exon 3
lower sequence: GLYMA01G35690.1 (Glycine max), 5'ss of exon 4
ATTCCACAAAATGGGAAGAGAAAAAGTTATTCTCATAGATTCTGTCTTGCCTTTTGGTTACGAGCTACTTATGTGTGACACTGACATGGTGTGGCTTAAGgtgcta------attcgacagattattatcactgttattcatcacgttatcttccttaatagactttcttctgataatttatatgtgacag---------
||| || |||||||| ||||||||||||||||| ||  | |   |  ||||||| |||||||||||  | |||||||||||||||||||| ||| | ||||||||       |||   ||   |||  | | | |||    | | ||    ||| |       |||| || | |  | | ||     |            
ATTTCATAAAATGGGGAGAGAAAAAGTTATTCTGATCAACTTGATACTGCCTTTCGGTTACGAGCTGTTGATGTGTGACACTGACATGGTTTGGTTGAAGgtgcttttctccatttctcaatatatgtttagttttaacttttaagtgtgattcatatgctagctttgtttttacgaatcatgcaaaatttaaaaagagc

upper sequence: AT2G35610.1 (Arabidopsis thaliana), 5'ss of exon 3
lower sequence: Vv02s0087g00740.t01 (Vitis vinifera), 5'ss of exon 4
ATTCCACAAAATGGGAAGAGAAAAAGTTATTCTCATAGATTCTGTCTTGCCTTTTGGTTACGAGCTACTTATGTGTGACACTGACATGGTGTGGCTTAAGgtgctaattcg-acagattattatcactgttattc----atcacg-ttatcttcctta-----atagactttcttctgataatttatat-gtgacag----
 || || |||||||| |||||||| ||||| || |||||| || ||||||||||||| || |||||||| ||||||||||| |||||||| ||| | |||||  |  |  |  |   |||||   | |||| ||     |||| | |  ||||| |||     ||| |  || |  | || |||  |||  | |       
GTTTCATAAAATGGGGAGAGAAAAGGTTATCCTGATAGATGCTCTCTTGCCTTTTGGCTATGAGCTACTGATGTGTGACACAGACATGGTTTGGTTAAAGgtagtcttctgtgcctgttattgg-attgttcttttgagatcaaggtcttcttctttagctacataaatgttatcattatcattattattattattatttg