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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TATCACTGAAGCTGGTGCAGATCGAGTTCTTGCTTGTGATCTTCATTCAGGACAGTCGATGGGTTATTTTGACATTCCAGTCGACCATGTGTACTGCCAGgttcacctctaaagccacgttcttgatacccctctttatgcattgtgtgtatgctcctttgtgtataatacctttatctgcttaattgtttcag

Basic information

species Arabidopsis thaliana
transcript AT2G35390.3
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT2G35390.3 (Arabidopsis thaliana), 5'ss of exon 3
lower sequence: GLYMA17G16400.4 (Glycine max), 5'ss of exon 4
TATCACTGAAGCTGGTGCAGATCGAGTTCTTGCTTGTGATCTTCATTCAGGACAGTCGATGGGTTATTTTGACATTCCAGTCGACCATGTGTACTGCCAGgttcacctctaaagccacgttcttgatacccctctttatg-cattgtgtgtatgctcctttgtgtataata-cctttatctgcttaattgtttcag
||| ||  ||||||| ||||| || |||||||||||||| ||||||||||| ||||| |||||||| ||||| ||||| || || |||||  |||| || ||         | |  | |||  |  |     |||| |   |||| | |  || || ||||   ||| ||  ||| ||                  
TATTACAAAAGCTGGGGCAGACCGTGTTCTTGCTTGTGACCTTCATTCAGGGCAGTCCATGGGTTACTTTGATATTCCTGTGGATCATGTACACTGTCAAgtaagtaagctatga-atgtttgtagtttatttcttgaaaacattttcta-atactacttt---tatgatgtcctctag-----------------

upper sequence: AT2G35390.3 (Arabidopsis thaliana), 5'ss of exon 3
lower sequence: GLYMA05G06110.1 (Glycine max), 5'ss of exon 4
TATCACTGAAGCTGGTGCAGATCGAGTTCTTGCTTGTGATCTTCATTCAGGACAGTCGATGGGTTATTTTGACATTCCAGTCGACCATGTGTACTGCCAGgttcacctctaaagccacgttcttgatacccctc-tttatgcattgtgtgtatgctcctttgtgtataatacctttatctgcttaattgtttcag
||| ||  ||||||| ||||| || ||||| |||||||| ||||||||||| ||||| |||||||| ||||| ||||| || || |||||  |||| |||||          |   | |||||| ||     |  |||||  ||||     ||| | | |  |   || |   | |   ||   | | |      
TATTACAAAAGCTGGGGCAGACCGTGTTCTCGCTTGTGACCTTCATTCAGGGCAGTCCATGGGTTACTTTGATATTCCTGTTGATCATGTACACTGTCAGgt----------aagtaggttcttaatggttgtagtttatttattggtaacatgtttcctaatac-tattgtttatga-tgtccactag------

upper sequence: AT2G35390.3 (Arabidopsis thaliana), 5'ss of exon 3
lower sequence: Vv02s0012g00530.t01 (Vitis vinifera), 5'ss of exon 4
TATCACTGAAGCTGGTGCAGATCGAGTTCTTGCTTGTGATCTTCATTCAGGACAGTCGATGGGTTATTTTGACATTCCAGTCGACCATGTGTACTGCCAGgt--tcacctctaaagccacgttcttgatacccctctttatgcattgtgtgtatgctcctttgtgtataatacctttatctgcttaattgtttcag-
||||||  |||| ||||| || || ||||||||||||||||||||||| || ||||| |||||||| ||||| ||||| || || ||  | || || |||||  | |  | | ||||||  |  ||||| |   ||||| |    ||  |  ||    ||    | || | |    | | || ||  |     ||  
TATCACCAAAGCAGGTGCGGACCGTGTTCTTGCTTGTGATCTTCATTCTGGGCAGTCCATGGGTTACTTTGATATTCCTGTGGATCACATATATTGTCAGgtaattaatttttaagccat-tgtttgatccttatcttttt---ctgactccatatcact----gaatgaaattactgtttgttttgtgcacacaag

upper sequence: AT2G35390.3 (Arabidopsis thaliana), 5'ss of exon 3
lower sequence: PP1S42_193V6.2 (Physcomitrella patens), 5'ss of exon 4
TATCACTGAAGCTGGTGCAGATCGAGTTCTTGCTTGTGATCTTCATTCAGGACAGTCGATGGGTTATTTTGACATTCCAGTCGACCATGTGTACTGCCAGgttcac----ctctaaagccacgttcttgatac---ccctctttatgcattgtgtgt--atgctcctttgtgtataatacctttatctgc--ttaattg-tttcag--------------
 |||||||| ||||| ||  || |||| || |||||||||||||||||||| ||||| ||||| |||||||||||| | || || || || ||  | |||||         ||| |   |    | ||   |    |  | | ||||  | |||     | |   |||| |   |    | || |    |  || |||  | || |              
AATCACTGAGGCTGGAGCCAATAGAGTGCTGGCTTGTGATCTTCATTCAGGGCAGTCAATGGGATATTTTGACATTTCCGTTGATCACGTTTATGGTCAGgtgagtatgattcttagctcgtacttttaccaagtgcattatgtatgggtcgtgcaacgaggtaactttattcttttcgctttgaatgacctttgattaatctcggagccttgtgtgcag

upper sequence: AT2G35390.3 (Arabidopsis thaliana), 5'ss of exon 3
lower sequence: PP1S123_105V6.1 (Physcomitrella patens), 5'ss of exon 4
TATCACTGAAGCTGGTGCAGATCGAGTTCTTGCTTGTGATCTTCATTCAGGACAGTCGATGGGTTATTTTGACATTCCAGTCGACCATGTGTACTGCCAGgttcacctctaaagccacgttcttgatacccctctttatgcattgtgtgtatgctcctttgtgtataatacctttatctgcttaattgtttcag--------------------------------------------------------------------------------------
 || ||||||||||| ||  || ||||  | |||||||||||||| ||||| ||||| |||||||| ||||||||| | ||||| ||||||||  | |||||   | | | || | |  ||  | ||     | ||| |  | | |   | |     ||  |||        ||| | || |    |   |||                                                                                       
AATTACTGAAGCTGGGGCCAATAGAGTATTGGCTTGTGATCTTCACTCAGGCCAGTCCATGGGTTACTTTGACATTTCTGTCGATCATGTGTATGGTCAGgtgagcattttaa-caagttttattattttattatttttaaaatttaaattttaaaattattgttattcttatttttttgttattctccctcaagtgtaacatgttctatttgtgctcggaggaaaattcacatgttttattttaaaggttattgtctaattgggaaaccttgtatgcag

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|116379575|gb|EG422167.1|EG422167
EST:     ACAGTCGGATGGGTTATTTTGACATTCCAGTCGACCATGTGTACTGCCAG                         CCGGTGATACTTGATTATCTTGCTAGCAAGTCA-TTCCCTCAGAGGAATTT
genomic: ACAGTCG-ATGGGTTATTTTGACATTCCAGTCGACCATGTGTACTGCCAGgttcacctct ... attgtttcagCCGGTGATACTTGATTATCTTGCTAGCAAGTCAATTCCCTCAGAGGA-TTT
EST: gi|116379978|gb|EG422570.1|EG422570
EST:     ACAGTCGAATGGGTTATTTTGACATTCCAGTCGACCATGTGTACTGCCAG                         CCGGTGATACTTGATTATCTTGCTAGCAAGTCA-TTCCCT
genomic: ACAGTCGA-TGGGTTATTTTGACATTCCAGTCGACCATGTGTACTGCCAGgttcacctct ... attgtttcagCCGGTGATACTTGATTATCTTGCTAGCAAGTCAATTCCCT
EST: gi|116379961|gb|EG422553.1|EG422553
EST:     GACAGTCGATGGGTTATTTTGACATTCCAGTCGACCATGTGTACTGCCAG                         CCGGTGATACTTGATTATCTTGCTAGCAAGT-AATTCCCTCAGAGGAATTT
genomic: GACAGTCGATGGGTTATTTTGACATTCCAGTCGACCATGTGTACTGCCAGgttcacctct ... attgtttcagCCGGTGATACTTGATTATCTTGCTAGCAAGTCAATTCCCTCAGAGGA-TTT
EST: gi|116379968|gb|EG422560.1|EG422560
EST:     GACAGTCGATGGGTTATTTTGACATTCCAGTCGACCATGTGTACTGCCAG                         CCGGTGATACTTGATTATCTTGCTAGCA-GTCAATTCCCTCAAAGGATTTG
genomic: GACAGTCGATGGGTTATTTTGACATTCCAGTCGACCATGTGTACTGCCAGgttcacctct ... attgtttcagCCGGTGATACTTGATTATCTTGCTAGCAAGTCAATTCCCTCAGAGGATTTG
EST: gi|116379973|gb|EG422565.1|EG422565
EST:     ACAGTCCGATGGGTTATTTTGACATTCCAGTCGACCATGTGTACTGCCAG                         CCGGTGATACTTGATTATCTTGCTAGCAAGTCA-TTCCCTCAGAG
genomic: ACAGTC-GATGGGTTATTTTGACATTCCAGTCGACCATGTGTACTGCCAGgttcacctct ... attgtttcagCCGGTGATACTTGATTATCTTGCTAGCAAGTCAATTCCCTCAGAG
EST: gi|116379979|gb|EG422571.1|EG422571
EST:     ACAGTCGAATGGGTTATTTTGACATTCCAGTCGACCATGTGTACTGCCAG                         CCGGTGATACTTGATTATCTTGCTAGCAAGTCAATTCCCTCAG
genomic: ACAGTCGA-TGGGTTATTTTGACATTCCAGTCGACCATGTGTACTGCCAGgttcacctct ... attgtttcagCCGGTGATACTTGATTATCTTGCTAGCAAGTCAATTCCCTCAG
EST: gi|116379976|gb|EG422568.1|EG422568
EST:     GACAGTCGATGGGTTATTTTGACATTCCAGTCGACCATGTGTACTGCCAG                         CCGGTGATACTTGATTATCTTGCTAGCAAGTCAATTCCCTCAGAGGATTTG
genomic: GACAGTCGATGGGTTATTTTGACATTCCAGTCGACCATGTGTACTGCCAGgttcacctct ... attgtttcagCCGGTGATACTTGATTATCTTGCTAGCAAGTCAATTCCCTCAGAGGATTTG
EST: gi|116379975|gb|EG422567.1|EG422567
EST:     ACAGTCGAATGGGTTATTTTGACATTCCAGTCGACCATGTGTACTGCCAG                         CCGGTGATACTTGATTATCTTGCTAGCAAGT-AATTCCCTC
genomic: ACAGTCGA-TGGGTTATTTTGACATTCCAGTCGACCATGTGTACTGCCAGgttcacctct ... attgtttcagCCGGTGATACTTGATTATCTTGCTAGCAAGTCAATTCCCTC
EST: gi|116379965|gb|EG422557.1|EG422557
EST:     GACAGTCGATGGGTTATTTTGACATTCCAGTCGACCATGTGTACTGCCAG                         CCGGTGATACTTGATTATCTTGCTAGCAAGTCAATTCCCTCAGAAGATTTT
genomic: GACAGTCGATGGGTTATTTTGACATTCCAGTCGACCATGTGTACTGCCAGgttcacctct ... attgtttcagCCGGTGATACTTGATTATCTTGCTAGCAAGTCAATTCCCTCAGAGGATTT-
EST: gi|116379954|gb|EG422546.1|EG422546
EST:     ACAGTCCGATGGGTTATTTTGACATTCCAGTCGACCATGTGTACTGCCAG                         CCGGTGATACTTGATTATCTTGCTAGCAAGTCA-TTCCCT
genomic: ACAGTC-GATGGGTTATTTTGACATTCCAGTCGACCATGTGTACTGCCAGgttcacctct ... attgtttcagCCGGTGATACTTGATTATCTTGCTAGCAAGTCAATTCCCT
EST: gi|116379955|gb|EG422547.1|EG422547
EST:     ACAGTCCGATGGGTTATTTTGACATTCCAGTCGACCATGTGTACTGCCAG                         CCGGTGATACTTGATTATCTTGCTAGCAAGTCA-TTCCCTCAG
genomic: ACAGTC-GATGGGTTATTTTGACATTCCAGTCGACCATGTGTACTGCCAGgttcacctct ... attgtttcagCCGGTGATACTTGATTATCTTGCTAGCAAGTCAATTCCCTCAG
EST: gi|116379969|gb|EG422561.1|EG422561
EST:     GACAGTCGATGGGTTATTTTGACATTCCAGTCGACCATGTGTACTGCCAG                         CCGGTGATACTTGATTATCTTGCTAGCAAGTCA-TTCCCTCAGAGGATTTG
genomic: GACAGTCGATGGGTTATTTTGACATTCCAGTCGACCATGTGTACTGCCAGgttcacctct ... attgtttcagCCGGTGATACTTGATTATCTTGCTAGCAAGTCAATTCCCTCAGAGGATTTG
EST: gi|116379981|gb|EG422573.1|EG422573
EST:     ACAGTCCGATGGGTTATTTTGACATTCCAGTCGACCATGTGTACTGCCAG                         CCGGTGATACTTGATTATCTTGCTAGCAAGTCA-TTCCCTCA
genomic: ACAGTC-GATGGGTTATTTTGACATTCCAGTCGACCATGTGTACTGCCAGgttcacctct ... attgtttcagCCGGTGATACTTGATTATCTTGCTAGCAAGTCAATTCCCTCA
EST: gi|116379958|gb|EG422550.1|EG422550
EST:     ACAGTCCGATGGGTTATTTTGACATTCCAGTCGACCATGTGTACTGCCAG                         CCGGTGATACTTGATTATCTTGCTAGCAAGTCA-TTCCCTCAGA
genomic: ACAGTC-GATGGGTTATTTTGACATTCCAGTCGACCATGTGTACTGCCAGgttcacctct ... attgtttcagCCGGTGATACTTGATTATCTTGCTAGCAAGTCAATTCCCTCAGA