1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
GATGAAGTTGTGAAGCTATCACCGCATGCTCGGGCCATTAGAGATGTGGAAGATGAAGAACTAAGAAGCTTTTTCTTCGGAATGTCCCCATGGCAGgtgctcattttagtttcttctttgtttttgaaacctatcggtattgaatcttggttttgaggttttagttattttctccag
species | Arabidopsis thaliana |
transcript | AT2G35260.1 |
intron # | 3 |
splice site | 5' |
intron type | U2 |
EST: TGGAAGATGAAGAACTAAGAAGCTTTTTCTTCGGAATGTCCCCATGGCAG TTTATACTCATTGTCGCGGCCAGTTCAATAGGAGAAGAGCTCTTTTACCGTEST: gi|125323918|gb|EL337998.1|EL337998
genomic: TGGAAGATGAAGAACTAAGAAGCTTTTTCTTCGGAATGTCCCCATGGCAGgtgctcattt ... ttttctccagTTTATACTCATTGTCGCGGCCAGTTCAATAGGAGAAGAGCTCTTTTACCGT
EST: GAAGCTTTTTCTTCGGAATGTCCTCATGGCAG TTTATACTCATTGTCGCGGCCAGTTCAATAGGAGAAGAGCTCTTTTACCGTEST: gi|124781602|gb|EH871545.1|EH871545
genomic: GAAGCTTTTTCTTCGGAATGTCCCCATGGCAGgtgctcattt ... ttttctccagTTTATACTCATTGTCGCGGCCAGTTCAATAGGAGAAGAGCTCTTTTACCGT
EST: TGGAAGATGAAGAACTAAGAAGCTTTTTCTTCGGAATGTCCCCATGGCAG TTTATACTCATTGTCEST: gi|125237402|gb|EL251487.1|EL251487
genomic: TGGAAGATGAAGAACTAAGAAGCTTTTTCTTCGGAATGTCCCCATGGCAGgtgctcattt ... ttttctccagTTTATACTCATTGTC
EST: TGGAAGATGAAGAACTAAGAAGCTTTTTCTTCGGAATGTCCCCATGGCAG TTTATACTCATTGTCGCGGCCAGTTCAATAGGAGAAGAGCTEST: gi|116414695|gb|EG457287.1|EG457287
genomic: TGGAAGATGAAGAACTAAGAAGCTTTTTCTTCGGAATGTCCCCATGGCAGgtgctcattt ... ttttctccagTTTATACTCATTGTCGCGGCCAGTTCAATAGGAGAAGAGCT
EST: TGGAAGATGAAGAACTAAGAAGCTTTTTCTTCGGAATGTCCCCATGGCAG TTTATACTCATTGTCGCGGCCAGTTCAATAGGAGAAGAGCTCTTTTACCGT
genomic: TGGAAGATGAAGAACTAAGAAGCTTTTTCTTCGGAATGTCCCCATGGCAGgtgctcattt ... ttttctccagTTTATACTCATTGTCGCGGCCAGTTCAATAGGAGAAGAGCTCTTTTACCGT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GATGAAGTTGTGAAGCTATCACCGCATGCTCGGGCCATTAGAGATGTGGAAGATGAAGAACTAAGAAGCTTTTTCTTCGGAATGTCCCCATGGCAGgtgctcattttagtttcttctttgtttttgaaacctatcggtattgaatcttggttttgaggttttagttattttctccag
- - - - - - - - - - - - - - - - - - - - - - - TGGAAG
- - - - - - - - - - - - - - - - - - - - - - - GGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - AAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGC