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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GAAAACGGCATTGATGCTTGCTCTTTGTAGATTCTTGAGGGACAAATATAGTCTTGCTGCTgtgagtattattatcagtggcaaacacaagattgttttctcgatctcactcatgtgactaaataagattttgatattgtaaacgttgtag

Basic information

species Arabidopsis thaliana
transcript AT2G34470.1
intron # 3
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|125106511|gb|EL159915.1|EL159915
EST:     TGATGCTTGCTCTTTGTAGATTCTTGAGGGACAAATATAGTCTTGCTGCT                         GTGACAAATGATATATTCACGAAAGAGGATGGTGAG
genomic: TGATGCTTGCTCTTTGTAGATTCTTGAGGGACAAATATAGTCTTGCTGCTgtgagtatta ... aacgttgtagGTGACAAATGATATATTCACGAAAGAGGATGGTGAG
EST: gi|86021192|gb|DR316938.1|DR316938
EST:     TGATGCTTGCTCTTTGTAGATTCTTGAGGGACAAATATAGTCTTGCTGCT                         GTGACAAATGATATATTCACGAAAGAGGAT
genomic: TGATGCTTGCTCTTTGTAGATTCTTGAGGGACAAATATAGTCTTGCTGCTgtgagtatta ... aacgttgtagGTGACAAATGATATATTCACGAAAGAGGAT
EST: gi|86021187|gb|DR316933.1|DR316933
EST:     TGATGCTTGCTCTTTGTAGATTCTTGAGGGACAAATATAGTCTTGCTGCT                         GTGACAAATGATATATTCACGAAAGAGGATGGTGAGTTTCTGGTGAAGAAT
genomic: TGATGCTTGCTCTTTGTAGATTCTTGAGGGACAAATATAGTCTTGCTGCTgtgagtatta ... aacgttgtagGTGACAAATGATATATTCACGAAAGAGGATGGTGAGTTTCTGGTGAAGAAT
EST: gi|19879192|gb|AU240023.1|AU240023
EST:     TGATGCTTGCTCTTTGTAGATTCTTGAGGGACAAATATAGTCTTGCTGCT                         GTGACAAATGATATATTCACGAAAGAGGATGGTGAGTTTCTGGTGAAGAAT
genomic: TGATGCTTGCTCTTTGTAGATTCTTGAGGGACAAATATAGTCTTGCTGCTgtgagtatta ... aacgttgtagGTGACAAATGATATATTCACGAAAGAGGATGGTGAGTTTCTGGTGAAGAAT
EST: gi|86021186|gb|DR316932.1|DR316932
EST:     TGATGCTTGSTCTTTGTAGATTCTTGAGGGACAAATATAGTCTTGSTGCT                         GTGACAAATGATATATTCACGAAAGAGGATGGTGAGTTTCTGGTGAA
genomic: TGATGCTTGCTCTTTGTAGATTCTTGAGGGACAAATATAGTCTTGCTGCTgtgagtatta ... aacgttgtagGTGACAAATGATATATTCACGAAAGAGGATGGTGAGTTTCTGGTGAA
EST: gi|86021188|gb|DR316934.1|DR316934
EST:     TGATGCTTGCTCTTTGTAGATTCTTGAGGGACAAATATAGTCTTGCTGCT                         GTGACAAATGATATATTCACGAAAGAGGATGGTGAGTTTCTGGTGAAGAA-
genomic: TGATGCTTGCTCTTTGTAGATTCTTGAGGGACAAATATAGTCTTGCTGCTgtgagtatta ... aacgttgtagGTGACAAATGATATATTCACGAAAGAGGATGGTGAGTTTCTGGTGAAGAAT
EST: gi|86021185|gb|DR316931.1|DR316931
EST:     TGATGCTTGCTCTTTGTAGATTCTTGAGGGACAAATATAGTCTTGCTGCT                         GTGACAAATGATATATTCACGAAAGAGGATGGTGAGTTTCTGGTGAAGAAT
genomic: TGATGCTTGCTCTTTGTAGATTCTTGAGGGACAAATATAGTCTTGCTGCTgtgagtatta ... aacgttgtagGTGACAAATGATATATTCACGAAAGAGGATGGTGAGTTTCTGGTGAAGAAT
EST: gi|125034340|gb|EL106609.1|EL106609
EST:     GATGCTTGCTCTTTGTAGTATTCTTGAGGGACAAATATAGTCTTGCTGCT                         GTGACAAATGATATATTCACGAAAGAGGATGGTGAG
genomic: GATGCTTGCTCTTTGTAG-ATTCTTGAGGGACAAATATAGTCTTGCTGCTgtgagtatta ... aacgttgtagGTGACAAATGATATATTCACGAAAGAGGATGGTGAG
EST: gi|86021189|gb|DR316935.1|DR316935
EST:     TGATGCTTGCTCTTTGTAGATTCTTGAGGGACAAATATAGTCTTGCTGCT                         GTGACAAATGATATATTCACGAAAGAGGATGGTGA
genomic: TGATGCTTGCTCTTTGTAGATTCTTGAGGGACAAATATAGTCTTGCTGCTgtgagtatta ... aacgttgtagGTGACAAATGATATATTCACGAAAGAGGATGGTGA

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
GAAAACGGCATTGATGCTTGCTCTTTGTAGATTCTTGAGGGACAAATATAGTCTTGCTGCTgtgagtattattatcagtggcaaacacaagattgttttctcgatctcactcatgtgactaaataagattttgatattgtaaacgttgtag

- - - - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - -  GCTGCT