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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TAAGTCCGGAGTTGATTGAGATTGGTTGCAAATGTAAAAACGAGCTTGGCCTTGCACATTTCCATTGCGCTGAAGCCTGGTTCAAGTTAAGAGGAAACAGgtaatgaattcaatatcttcgactgttattagcttagtaagagtatggactaatggacaagattcaacattaagtcaaactcggtgcttttgtttggtgttcttggcag

Basic information

species Arabidopsis thaliana
transcript AT2G34200.1
intron # 3
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|116386864|gb|EG429456.1|EG429456
EST:     CTTGCACATTTCCATTGCGCTGAAGCCTGGTTCAAGTTAAGAGGAAACAG                         TGTGTGTGAAATCTGCGGTTGCACAGCGAAGAATGTTACAGTAAGGTTGAT
genomic: CTTGCACATTTCCATTGCGCTGAAGCCTGGTTCAAGTTAAGAGGAAACAGgtaatgaatt ... ttcttggcagTGTGTGTGAAATCTGCGGTTGCACAGCGAAGAATGTTACAGTAAGGTTGAT
EST: gi|116398547|gb|EG441139.1|EG441139
EST:     CTTGCGCATTTCCATTGCGCTGAAGCCTGGTTCAAGTTAAGAGGAAACAG                         TGTGTGTGAAATCTGCGGTTGCACAGCGAAGAATGTTACAGTAAGGTTGAT
genomic: CTTGCACATTTCCATTGCGCTGAAGCCTGGTTCAAGTTAAGAGGAAACAGgtaatgaatt ... ttcttggcagTGTGTGTGAAATCTGCGGTTGCACAGCGAAGAATGTTACAGTAAGGTTGAT
EST: gi|116461694|gb|EG504286.1|EG504286
EST:     CTTGCACATTTCCATTGCGCTGAAGCCTGGTTCAAGTTAAGAGGAAACAG                         TGTGTGTGAAATCTGCGGTTGCACAGCGAAGAATGTTACAGTAAGGTTGAT
genomic: CTTGCACATTTCCATTGCGCTGAAGCCTGGTTCAAGTTAAGAGGAAACAGgtaatgaatt ... ttcttggcagTGTGTGTGAAATCTGCGGTTGCACAGCGAAGAATGTTACAGTAAGGTTGAT
EST: gi|116398531|gb|EG441123.1|EG441123
EST:     CTTGCACATTTCCATTGCGCTGAAGCCTGGTTCAAGTTAAGAGGAAACAG                         TGTGTGTGAAATCTGCGGTTGCACAGCGAAGAATGTTACAGTAAGGTTGAT
genomic: CTTGCACATTTCCATTGCGCTGAAGCCTGGTTCAAGTTAAGAGGAAACAGgtaatgaatt ... ttcttggcagTGTGTGTGAAATCTGCGGTTGCACAGCGAAGAATGTTACAGTAAGGTTGAT
EST: gi|116386865|gb|EG429457.1|EG429457
EST:     CTTGCACATTTCCATTGCGCTGAAGCCTGGTTCAAGTTAAGAGGAAACAG                         TGTGTGTGAAATCTGCGGTTGCACAGCGAAGAATGTTACAGTAAGGTTGAT
genomic: CTTGCACATTTCCATTGCGCTGAAGCCTGGTTCAAGTTAAGAGGAAACAGgtaatgaatt ... ttcttggcagTGTGTGTGAAATCTGCGGTTGCACAGCGAAGAATGTTACAGTAAGGTTGAT
EST: gi|116386863|gb|EG429455.1|EG429455
EST:     CTTGCACATTTCCATTGCGCTGAAGCCTGGTTCAAGTTAAGAGGAAACAG                         TGTGTGTGAAATTTGCGGTTGCACAGCGAAGAATGTTACAGTAAGGTTGAT
genomic: CTTGCACATTTCCATTGCGCTGAAGCCTGGTTCAAGTTAAGAGGAAACAGgtaatgaatt ... ttcttggcagTGTGTGTGAAATCTGCGGTTGCACAGCGAAGAATGTTACAGTAAGGTTGAT
EST: gi|116398545|gb|EG441137.1|EG441137
EST:     CTTGCGCATTTCCATTGCGCTGAAGCCTGGTTCAAGTTAAGAGGAAACAG                         TGTGTGTGAAATCTGCGGTTGCACAGCGAAGAATGTTACAGTAAGGTTGAT
genomic: CTTGCACATTTCCATTGCGCTGAAGCCTGGTTCAAGTTAAGAGGAAACAGgtaatgaatt ... ttcttggcagTGTGTGTGAAATCTGCGGTTGCACAGCGAAGAATGTTACAGTAAGGTTGAT
EST: gi|116386853|gb|EG429445.1|EG429445
EST:     CTTGCACATTTCCATTGCGCTGAAGCCTGGTTCAAGTTAAGAGGAAACAG                         TGTGTGTGAAATCTGCGGTTGCACAGCGAAGAATGTTACAGTAAGGTTGAT
genomic: CTTGCACATTTCCATTGCGCTGAAGCCTGGTTCAAGTTAAGAGGAAACAGgtaatgaatt ... ttcttggcagTGTGTGTGAAATCTGCGGTTGCACAGCGAAGAATGTTACAGTAAGGTTGAT
EST: gi|116386868|gb|EG429460.1|EG429460
EST:     CTTGCACATTTCCATTGCGCTGAAGCCTGGTTCAAGTTAAGAGGAAACAG                         TGTGTGTGAAATCTGCGGTTGCACAGCGTAAGAATGTTACAGTAAGGTTGA
genomic: CTTGCACATTTCCATTGCGCTGAAGCCTGGTTCAAGTTAAGAGGAAACAGgtaatgaatt ... ttcttggcagTGTGTGTGAAATCTGCGGTTGCACAGCG-AAGAATGTTACAGTAAGGTTGA
EST: gi|116386851|gb|EG429443.1|EG429443
EST:     CTTGCACATTTCCATTGCGCTGAAGCCTGGTTCAAGTTAAGAGGAAACAG                         TGTGTGTGAAATCTGCGGTTGCACAGCGAAGAATGTTACAGTAAGGTTGAT
genomic: CTTGCACATTTCCATTGCGCTGAAGCCTGGTTCAAGTTAAGAGGAAACAGgtaatgaatt ... ttcttggcagTGTGTGTGAAATCTGCGGTTGCACAGCGAAGAATGTTACAGTAAGGTTGAT
EST: gi|116398575|gb|EG441167.1|EG441167
EST:     CTTGCACATTTCCATTGCGCTGAAGCCTGGTTCAAGTTAAGAGGAAACAG                         TGTGTGTGAAATCTGCGGTTGCACAGCGAAGAATGTTACAGTAAGGTTGAT
genomic: CTTGCACATTTCCATTGCGCTGAAGCCTGGTTCAAGTTAAGAGGAAACAGgtaatgaatt ... ttcttggcagTGTGTGTGAAATCTGCGGTTGCACAGCGAAGAATGTTACAGTAAGGTTGAT
EST: gi|116386845|gb|EG429437.1|EG429437
EST:     CTTGCACATTTCCATTGCGCTGAAGCCTGGTTCAAGTTAAGAGGAAACAG                         TGTGTGTGAAATCTGCGGTTGCACAGCGAAGAATGTTACAGTAAGGTTGAT
genomic: CTTGCACATTTCCATTGCGCTGAAGCCTGGTTCAAGTTAAGAGGAAACAGgtaatgaatt ... ttcttggcagTGTGTGTGAAATCTGCGGTTGCACAGCGAAGAATGTTACAGTAAGGTTGAT
EST: gi|116398530|gb|EG441122.1|EG441122
EST:     CTTGCACATTTCCATTGCGCTGAAGCCTGGTTCAAGTTAAGAGGAAACAG                         TGTGTGTGAAATCTGCGGTTGCACAGCGAAGAATGTTACAGTAAGGTTGAT
genomic: CTTGCACATTTCCATTGCGCTGAAGCCTGGTTCAAGTTAAGAGGAAACAGgtaatgaatt ... ttcttggcagTGTGTGTGAAATCTGCGGTTGCACAGCGAAGAATGTTACAGTAAGGTTGAT
EST: gi|116386869|gb|EG429461.1|EG429461
EST:     CTTGCACATTTCCATTGCGCTGAAGCCTGGTTCAAGTTAAGAGGAAACAG                         TGTGTGTGAAATCTGCGGTTGCACAGCGAAGAATGTTACAGTAAGGTTGAT
genomic: CTTGCACATTTCCATTGCGCTGAAGCCTGGTTCAAGTTAAGAGGAAACAGgtaatgaatt ... ttcttggcagTGTGTGTGAAATCTGCGGTTGCACAGCGAAGAATGTTACAGTAAGGTTGAT
EST: gi|116386850|gb|EG429442.1|EG429442
EST:     CTTGCACATTTCCATTGCGCTGAAGCCTGGTTCAAGTTAAGAGGAAACAG                         TGTGTGTGAAATCTGCGGTTGCACAGCGAAGAATGTTACAGTAAGGTTGAT
genomic: CTTGCACATTTCCATTGCGCTGAAGCCTGGTTCAAGTTAAGAGGAAACAGgtaatgaatt ... ttcttggcagTGTGTGTGAAATCTGCGGTTGCACAGCGAAGAATGTTACAGTAAGGTTGAT
EST: gi|116386852|gb|EG429444.1|EG429444
EST:     CTTGCACATTTCCATTGCGCTGAAGCCTGGTTCAAGTTAAGAGGAAACAG                         TGTGTGTGAAATCTGCGGTTGCACAGCGAAGAATGTTACAGTAAGGTTGAT
genomic: CTTGCACATTTCCATTGCGCTGAAGCCTGGTTCAAGTTAAGAGGAAACAGgtaatgaatt ... ttcttggcagTGTGTGTGAAATCTGCGGTTGCACAGCGAAGAATGTTACAGTAAGGTTGAT
EST: gi|116398551|gb|EG441143.1|EG441143
EST:     CTTGCACATTTCCATTGCGCTGAAGCCTGGTTCAAGTTAAGAGGAAACAG                         TGTGTGTGAAATCTGCGGTTGCACAGCGAAGAATGTTACAGTAAGGTTGAT
genomic: CTTGCACATTTCCATTGCGCTGAAGCCTGGTTCAAGTTAAGAGGAAACAGgtaatgaatt ... ttcttggcagTGTGTGTGAAATCTGCGGTTGCACAGCGAAGAATGTTACAGTAAGGTTGAT
EST: gi|116386847|gb|EG429439.1|EG429439
EST:     CTTGCACATTTCCATTGCGCTGAAGCCTGGTTCAAGTTAAGAGGAAACAG                         TGTGTGTGAAATCTGCGGTTGCACAGCGAAGAATGCTACAGTAAGGTTGAT
genomic: CTTGCACATTTCCATTGCGCTGAAGCCTGGTTCAAGTTAAGAGGAAACAGgtaatgaatt ... ttcttggcagTGTGTGTGAAATCTGCGGTTGCACAGCGAAGAATGTTACAGTAAGGTTGAT
EST: gi|116386848|gb|EG429440.1|EG429440
EST:     CTTGCACATTTCCATTGCGCTGAAGCCTGGTTCAAGTTAAGAGGAAACAG                         TGTGTGTGAAATCTGCGGTTGCACAGCGAAGAATGTTACAGTAAGGTTGAT
genomic: CTTGCACATTTCCATTGCGCTGAAGCCTGGTTCAAGTTAAGAGGAAACAGgtaatgaatt ... ttcttggcagTGTGTGTGAAATCTGCGGTTGCACAGCGAAGAATGTTACAGTAAGGTTGAT
EST: gi|116386855|gb|EG429447.1|EG429447
EST:     CTTGCACATTTCCATTGCGCTGAAGCCTGGTTCAAGTTAAGAGGAAACAG                         TGTGTGTGAAATCTGCGGTTGCACAGCGAAGAATGCTACAGTAAGGTTGAT
genomic: CTTGCACATTTCCATTGCGCTGAAGCCTGGTTCAAGTTAAGAGGAAACAGgtaatgaatt ... ttcttggcagTGTGTGTGAAATCTGCGGTTGCACAGCGAAGAATGTTACAGTAAGGTTGAT
EST: gi|116398555|gb|EG441147.1|EG441147
EST:     CTTGCACATTTCCATTGCGCTGAAGCCTGGTTCAAGTTAAGAGGAAACAG                         TGTGTGTGAAATCTGCGGTTGCACAGCGAAGAATGTTACAGTAAGGTTGAT
genomic: CTTGCACATTTCCATTGCGCTGAAGCCTGGTTCAAGTTAAGAGGAAACAGgtaatgaatt ... ttcttggcagTGTGTGTGAAATCTGCGGTTGCACAGCGAAGAATGTTACAGTAAGGTTGAT
EST: gi|116386858|gb|EG429450.1|EG429450
EST:     CTTGCACATTTCCATTGCGCTGAAGCCTGGTTCAAGTTAAGAGGAAACAG                         TGTGTGTGAAATCTGCGGTTGCACAGCGAAGAATGTTACAGTAAGGTTGAT
genomic: CTTGCACATTTCCATTGCGCTGAAGCCTGGTTCAAGTTAAGAGGAAACAGgtaatgaatt ... ttcttggcagTGTGTGTGAAATCTGCGGTTGCACAGCGAAGAATGTTACAGTAAGGTTGAT
EST: gi|116461696|gb|EG504288.1|EG504288
EST:     CTTGCACATTTCCATTGCGCTGAAGCCTGGTTCAAGTTAAGAGGAAACAG                         TGTGTGTGAAATCTGCGGTTGCACAGCGAAGAATGTTACAGTAAGGTTGAT
genomic: CTTGCACATTTCCATTGCGCTGAAGCCTGGTTCAAGTTAAGAGGAAACAGgtaatgaatt ... ttcttggcagTGTGTGTGAAATCTGCGGTTGCACAGCGAAGAATGTTACAGTAAGGTTGAT
EST: gi|116386867|gb|EG429459.1|EG429459
EST:     CTTGCACATTTCCATTGCGCTGAAGCCTGGTTCAAGTTAAGAGGAAACAG                         TGTGTGTGAAATCTGCGGTTGCACAGCGAAGAATGTTACAGTAAGGTTGAT
genomic: CTTGCACATTTCCATTGCGCTGAAGCCTGGTTCAAGTTAAGAGGAAACAGgtaatgaatt ... ttcttggcagTGTGTGTGAAATCTGCGGTTGCACAGCGAAGAATGTTACAGTAAGGTTGAT

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
TAAGTCCGGAGTTGATTGAGATTGGTTGCAAATGTAAAAACGAGCTTGGCCTTGCACATTTCCATTGCGCTGAAGCCTGGTTCAAGTTAAGAGGAAACAGgtaatgaattcaatatcttcgactgttattagcttagtaagagtatggactaatggacaagattcaacattaagtcaaactcggtgcttttgtttggtgttcttggcag

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  CTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AGAGGA