Sequence
atgc intronic sequence ATGC exonic sequenceCGTTTCGACAAATCACAAGATTTTTGAAAGAGCAGAAGAGATGGGAATTGAAGAAGATAATATTAGAAAATACACAACACCAACATATAGAGCTCCTGAGgtttgactggatatgcacctatgcagattataagagttttaaaagtggtgaaaaaatgtttgatttatgtctttattggcaatag
Basic information
species | Arabidopsis thaliana |
transcript | AT2G32850.1 |
intron # | 3 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: AT2G32850.2 (Arabidopsis thaliana), 5'ss of exon 3
lower sequence: LOC_Os09g10720.1 (Oryza sativa), 5'ss of exon 2
CGTTTCGACAAATCACAAGATTTTTGAAAGAGCAGAAGAGATGGGAATTGAAGAAGATAATATTAGAAAATACACAACACCAACATATAGAGCTCCTGAGgttt-gactggatatgcacctatgcagattataagagttttaaaagtggtg---aaaaaatgtttgatttatgtctttattggcaatag
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TGTATCGACCAACCATAAGTGCTTTGATAAACCTGAGGAGATGGGTATTGAAGAGGATAATATTCGAAAGCACACAACTCCTGCATATAGAGCTCCCGAGgttcagattggacatacctgttttgagctctt-----tttcagaaatttcttcttatctaccttttgttaacatgtttactgattgtag
upper sequence: AT2G32850.2 (Arabidopsis thaliana), 5'ss of exon 3
lower sequence: Vv13s0156g00640.t01 (Vitis vinifera), 5'ss of exon 4
CGTTTCGACAAATCACAAGATTTTTGAAAGAGCAGAAGAGATGGGAATTGAAGAAGATAATATTAGAAAATACACAACACCAACATATAGAGCTCCTGAGgtttgactggatatgcacctatgcagattataagagttttaaaagtggtgaaaaaatgtttga-------tttatgtctttattggcaatag
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CACCTCCACCAATCATAAGCGCTTTGAGAAGCCTGAAGAAATGGGCATTGAAGAAGACAATATCAGAAAGTATACTACACCTGCATATAGAGCTCCTGAGgtt-gaatgaaaaaccatacttttgatatgttaatgctg-acatttggttgtaaagagtttgactcccattttcttccttttcttgtcctagMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|116429362|gb|EG471954.1|EG471954EST: AAGAAGATAATATTAGAAAATACACAACACCAACATATAGAGCTCCTGAG ATGTGGGATCTCTTTC
genomic: AAGAAGATAATATTAGAAAATACACAACACCAACATATAGAGCTCCTGAGgtttgactgg ... ttggcaatagATGTGGGATCTCTTTC
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
CGTTTCGACAAATCACAAGATTTTTGAAAGAGCAGAAGAGATGGGAATTGAAGAAGATAATATTAGAAAATACACAACACCAACATATAGAGCTCCTGAGgtttgactggatatgcacctatgcagattataagagttttaaaagtggtgaaaaaatgtttgatttatgtctttattggcaatag
- - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCT