1 5' 3' | 2 5' 3' | 3 5' 3' |
ACCTCATGTCTTCTGGAGCTGCACGTGCAATGGTCCATGCGTGGCTACTAAACATACGCTCCATTGTCTATGAAGGTCATGAGTTACCTAAAGTCTTGAGgtaagctacaaagagctcttcggtttaactatcaacttaaaccggcctataatacccggctcttttccttttatggttgcttcctaaaactccatcaggg...
species | Arabidopsis thaliana |
transcript | AT2G31400.1 |
intron # | 3 |
splice site | 5' |
intron type | U2 |
EST: AACATACGCTCCATTGTCTATGAAGGTCATGAGTTACCTAAAGTCTTGAG TATATTGACTGGCTGGGGGAAACACAGCAAAGTGGTTGGACACGGAGCACTEST: gi|86022314|gb|DR318067.1|DR318067
genomic: AACATACGCTCCATTGTCTATGAAGGTCATGAGTTACCTAAAGTCTTGAGgtaagctaca ... attgtggcagTATATTGACTGGCTGGGGGAAACACAGCAAAGTGGTTGGAGACGGAGCACT
EST: AACATACGCTCCATTGTCTATGAAGGTCATGAGTTACCTAAAGTCTTGAG TATATTGACTGGCTGGGGGAAACACAGCAAAGTGGTTGGAGACGGAGCACTEST: gi|125220340|gb|EL234425.1|EL234425
genomic: AACATACGCTCCATTGTCTATGAAGGTCATGAGTTACCTAAAGTCTTGAGgtaagctaca ... attgtggcagTATATTGACTGGCTGGGGGAAACACAGCAAAGTGGTTGGAGACGGAGCACT
EST: CATTGTCTATGAAGGTCATGAGTTACCTAAAGTCTTGAG TATATTGACTGGCTGGGGGAAACACAGCTAAGTGGTTGGAGACGGAGCACT
genomic: CATTGTCTATGAAGGTCATGAGTTACCTAAAGTCTTGAGgtaagctaca ... attgtggcagTATATTGACTGGCTGGGGGAAACACAGCAAAGTGGTTGGAGACGGAGCACT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ACCTCATGTCTTCTGGAGCTGCACGTGCAATGGTCCATGCGTGGCTACTAAACATACGCTCCATTGTCTATGAAGGTCATGAGTTACCTAAAGTCTTGAGgtaagctacaaagagctcttcggtttaactatcaacttaaaccggcctataatacccggctcttttccttttatggttgcttcctaaaactccatcaggg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -acaaagag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ccggctct
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ttgcttcc