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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGAGAAGGCCCTCTTGCACAGACTAAGTTTGTTCTTGCCAAAGCCTTGAAGTATGGACTACGCCCAATCCTTCTCTTAAACAAGGTAGATCGACCTTCAGgtatgcattgcattcactccctttcttagtaaaacttgttggtcttgtttaatttgtttagtttctcatccttttttttcttgcttcgtttatttacag

Basic information

species Arabidopsis thaliana
transcript AT2G31060.1
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT2G31060.3 (Arabidopsis thaliana), 5'ss of exon 3
lower sequence: GLYMA12G14080.1 (Glycine max), 5'ss of exon 3
GGAGAAGGCCCTCTTGCACAGACTAAGTTTGTTCTTGCCAAAGCCTTGAAGTATGGACTACGCCCAATCCTTCTCTTAAACAAGGTAGATCGACCTTCAGgtatgcattgca---ttcactccctttcttagtaaaacttgttggtcttgtttaatttgtttagtttctcatccttttttttcttgcttcgtttatttacag-
|| ||||| || ||||||||||| || ||||||||||| || ||||||||||| ||  | || || || ||||| |||||||| ||||| || ||| ||||||  |||  ||   ||| || ||  |   |  |||     ||||  |  ||  | ||  || || |||  | || || |   ||  |   |||| || |   
GGTGAAGGTCCACTTGCACAGACGAAATTTGTTCTTGCAAAGGCCTTGAAGTACGGGTTGCGGCCTATTCTTCTTTTAAACAAAGTAGACCGTCCTGCAGgtagtcatcacatgattctctgcccattacatgaaatagaattggcttaattgtactt--ttggtctctt-tactattatcatttcttgaatttagttccccc

upper sequence: AT2G31060.3 (Arabidopsis thaliana), 5'ss of exon 3
lower sequence: GLYMA06G43820.2 (Glycine max), 5'ss of exon 3
GGAGAAGGCCCTCTTGCACAGACTAAGTTTGTTCTTGCCAAAGCCTTGAAGTATGGACTACGCCCAATCCTTCTCTTAAACAAGGTAGATCGACCTTCAGgtatgcattgcattcactccctttctta-gtaaaacttgttggtcttgtttaatttgtttagtttctcatccttttttttcttgcttcg--tttatttacag
|| ||||| || |||||||| || || ||||||||||| || ||||||||||| ||  | || || || ||||| |||||||| ||||| |||||| ||||||  ||| ||||      |     |||  |  ||     | | |||  ||    | ||| || |||   |   | || || |   |||  |||| |  |  
GGTGAAGGTCCACTTGCACAAACGAAATTTGTTCTTGCAAAGGCCTTGAAGTACGGGTTGCGGCCTATTCTTCTTTTAAACAAAGTAGACCGACCTGCAGgtagtcatcgcatgattctctgccgttacatgcaatagagttgccttaattgtact-tttggtctctttactactattatcatttctcgaatttagtccct-
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|116424468|gb|EG467060.1|EG467060
EST:     GTATGGACTACGCCCAATCCTTCTCTTAAACAAGGTAGATCGACCTTCAG                         TCACGGAAGAGAGGTGTGATGAAGTGGAGAGTTTGGTGTTTGATCTTTTTG
genomic: GTATGGACTACGCCCAATCCTTCTCTTAAACAAGGTAGATCGACCTTCAGgtatgcattg ... ttatttacagTCACGGAAGAGAGGTGTGATGAAGTGGAGAGTTTGGTGTTTGATCTTTTTG
EST: gi|116457297|gb|EG499889.1|EG499889
EST:     GTATGGACTACGCCCAATCCTTCTCTTAAACAAGGTAGATCGACCTTCAG                         TCACGGAAGAGAGGTGTGATGAAGTGGAGAGTTTGGTGTTTGATCTTTTTG
genomic: GTATGGACTACGCCCAATCCTTCTCTTAAACAAGGTAGATCGACCTTCAGgtatgcattg ... ttatttacagTCACGGAAGAGAGGTGTGATGAAGTGGAGAGTTTGGTGTTTGATCTTTTTG
EST: gi|116457298|gb|EG499890.1|EG499890
EST:     GTATGGACTACGCCCAATCCTTCTCTTAAACAAGGTAGATCGACCTTCAG                         TCACGGAAGAGAGGTGTGATGAAGTGGAGAGTTTGGTGTTTGATCTTTTTG
genomic: GTATGGACTACGCCCAATCCTTCTCTTAAACAAGGTAGATCGACCTTCAGgtatgcattg ... ttatttacagTCACGGAAGAGAGGTGTGATGAAGTGGAGAGTTTGGTGTTTGATCTTTTTG