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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ACCATTAGTTACATGGCCGAACGTGTTGTTGGAACAGGATCATTCGGAATTGTATTCCAGgtatcattgtgcttgtcactgtctacaggcaaatggctttttgtctttcctttctgatcagattgttaacttaccattctag

Basic information

species Arabidopsis thaliana
transcript AT2G30980.1
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT2G30980.1 (Arabidopsis thaliana), 5'ss of exon 3
lower sequence: GLYMA13G36570.1 (Glycine max), 5'ss of exon 2
ACCATTAGTTACATGGCCGAACGTGTTGTTGGAACAGGATCATTCGGAATTGTATTCCAGgta----tcattgtgcttgtcactgtctacaggcaaatggctttttgtctttcctttctgatcagattgttaacttaccattctag---------------------------------------
||||| ||||||||||| |||||||||||||| || ||||||||||||||||| |||||||||    | | ||   |  | ||  |||  |||  |      ||    |||| |||||    | |     || || |   | ||                                         
ACCATCAGTTACATGGCTGAACGTGTTGTTGGCACTGGATCATTCGGAATTGTTTTCCAGgtaaggataagtgaagtaattacc-tctttaggtgataactgttcctactttgctttccctgctgtcaagtatctcatattgcttcacaccattgggttatgttcctttttgaccggaaacaaag

upper sequence: AT2G30980.1 (Arabidopsis thaliana), 5'ss of exon 3
lower sequence: GLYMA12G33950.1 (Glycine max), 5'ss of exon 3
ACCATTAGTTACATGGCCGAACGTGTTGTTGGAACAGGATCATTCGGAATTGTATTCCAGgta----tcattgtgcttgtcactgtctacaggcaaatgg--ctttttgtctttcctttctgatcagattgttaacttac----cattctag------------------------------
||||| |||||||||||||||||||||||||| || |||||||| || ||||| |||||||||    | | ||   |  | ||  |     |  || ||   ||  ||  |||||| | |||   ||  | | |  ||      ||  || |                              
ACCATCAGTTACATGGCCGAACGTGTTGTTGGCACTGGATCATTTGGCATTGTTTTCCAGgtaaggataagtgaagtaattaccattaggtgataactgttcctactttgctttccctgctgtcaagtatctcatattgtttcacacccttgggttatgttcctttttgacctgaaacaaag

upper sequence: AT2G30980.1 (Arabidopsis thaliana), 5'ss of exon 3
lower sequence: GLYMA06G42840.1 (Glycine max), 5'ss of exon 3
ACCATTAGTTACATGGCCGAACGTGTTGTTGGAACAGGATCATTCGGAATTGTATTCCAGgtatcattgtgcttgtcactgtctacaggcaaatggctttttgtctttcctttctgatcagattgtta--acttaccatt-ctag-----------------------------
||||| ||||||||||| |||||||||||||| || |||||||| ||| |||| |||||||||    ||  |   ||||       |     ||  |||||   |||||  | |||   ||  | | |    || |||   || |                             
ACCATCAGTTACATGGCAGAACGTGTTGTTGGCACTGGATCATTTGGAGTTGTTTTCCAGgtaaggatgaaca-atcaccaaggtgacaactattccttttaagctttctctgctgtcaagtatctcattgttttccaccactggatgacatttctcttttacctaaaacatag

upper sequence: AT2G30980.1 (Arabidopsis thaliana), 5'ss of exon 3
lower sequence: GLYMA12G15470.2 (Glycine max), 5'ss of exon 3
ACCATTAGTTACATGGCCGAACGTGTTGTTGGAACAGGATCATTCGGAATTGTATTCCAGgtatcattgtgcttgtcactgtctacaggcaaatggctttttgtctttcctttctgat-cagattgt-taacttaccattctag------------------------------
||||| ||||||||||| |||||||||||||| || |||||||| ||| |||| || |||||||   ||  |   ||||       |   | ||  || ||   |||||  | |||   || ||    |   || |||  |  |                              
ACCATCAGTTACATGGCAGAACGTGTTGTTGGCACTGGATCATTTGGAGTTGTTTTTCAGgtatggatgaaca-atcacctagatgacaaatattcctattaagctttctctgctgtcacatatctcattgttttccacccctggatggcattcctcttttacctaaaatatag

upper sequence: AT2G30980.1 (Arabidopsis thaliana), 5'ss of exon 3
lower sequence: PP1S306_43V6.2 (Physcomitrella patens), 5'ss of exon 4
ACCATTAGTTACATGGCCGAACGTGTTGTTGGAACAGGATCATTCGGAATTGTATTCCAGgt-atcattgtgcttgtcactgtctacaggcaaatggctttttgtctt-tcctttctgatcagattgttaacttacc-attctag--------------------------------------------------------------------------------------------------------
|| || || ||   ||| |||||||||||||| || ||||||||||| ||||| |||||||| ||  ||  | ||    || | | ||       |   |   |  || ||||||| | |||||  |    | ||   | ||| |                                                                                                        
ACGATCAGCTATTCGGCAGAACGTGTTGTTGGCACTGGATCATTCGGGATTGTCTTCCAGgtgattgttaggattaa-gctctgttcaatttggcgctgtaacgaattctcctttccgctcagacagacctcgtatggaatctggtgtgtggtccgcgatggaggtttcgcacatgtttgttcgcctctcggaatagctcatacggaaagataactgaatgatttttgcgtgttaatgtgtgttgccag

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|86048164|gb|DR343919.1|DR343919
EST:     ACATGGCCGAACATGTTGTTGGAACAGGATCATTCGGAATTGTATTCCAG                         GCAAAATGCTTGGAAACTGGAGAATCAGTAGCCATTAAGAAGGTTTTGCAA
genomic: ACATGGCCGAACGTGTTGTTGGAACAGGATCATTCGGAATTGTATTCCAGgtatcattgt ... accattctagGCAAAATGCTTGGAAACTGGAGAATCAGTAGCCATTAAGAAGGTTTTGCAA
EST: gi|86048152|gb|DR343907.1|DR343907
EST:     ACATGGCCGAACGTGTTGTTGGAACAGGATCATTCGGAATTGTATTCCAG                         GCAAAATGCTTGGAAACTGGAGAATCAGTAGCCATTAAGAAGGTTTTGCAA
genomic: ACATGGCCGAACGTGTTGTTGGAACAGGATCATTCGGAATTGTATTCCAGgtatcattgt ... accattctagGCAAAATGCTTGGAAACTGGAGAATCAGTAGCCATTAAGAAGGTTTTGCAA
EST: gi|86048153|gb|DR343908.1|DR343908
EST:     ACATGGCCGAACGTGTTGTTGGAACAGGATCATTCGGAATTGTATTCCAG                         GCAAAATGCTTGGGAAACTGGAGAATCAGTAGCCCATTAAAGAAGGTTTTG
genomic: ACATGGCCGAACGTGTTGTTGGAACAGGATCATTCGGAATTGTATTCCAGgtatcattgt ... accattctagGCAAAATGCTTGG-AAACTGGAGAATCAGTAGCC-ATTAA-GAAGGTTTTG
EST: gi|86048158|gb|DR343913.1|DR343913
EST:     ACATGGCCGAACGTGTTGTTGGAACAGGATCATTCGGAATTGTATTCCAG                         GCAAAATGCTTGGAAACTGGAGAATCAGTAGCCATTAGGAAGGTTTTGCAA
genomic: ACATGGCCGAACGTGTTGTTGGAACAGGATCATTCGGAATTGTATTCCAGgtatcattgt ... accattctagGCAAAATGCTTGGAAACTGGAGAATCAGTAGCCATTAAGAAGGTTTTGCAA
EST: gi|164236192|gb|EL975540.1|EL975540
EST:     ACATGGCCGAACGTGTTGTTGGAACAGGATCATTCGGAATTGTATTCCAG                         GCAAAATGCTTGGAAACTGGAGAATCAGTAGCCATTAAGAAGGTTTTGC
genomic: ACATGGCCGAACGTGTTGTTGGAACAGGATCATTCGGAATTGTATTCCAGgtatcattgt ... accattctagGCAAAATGCTTGGAAACTGGAGAATCAGTAGCCATTAAGAAGGTTTTGC
EST: gi|86048162|gb|DR343917.1|DR343917
EST:     ACATGGCCGAACGTGTTGTTGGAACAGGATCATTCGGAATTGTATTCCAG                         GCAAAATGCTTGGAAACTGGAGAATCAGTAGCCATTAAGAAGGTTTTGCAA
genomic: ACATGGCCGAACGTGTTGTTGGAACAGGATCATTCGGAATTGTATTCCAGgtatcattgt ... accattctagGCAAAATGCTTGGAAACTGGAGAATCAGTAGCCATTAAGAAGGTTTTGCAA
EST: gi|86048161|gb|DR343916.1|DR343916
EST:     ACATGGCCGAACGTGTTGTTGGAACAGGATCATTCGGAATTGTATTCCAG                         GCAAAATGCTTGGAAACTGGAGAATCAGTAGCCATTAAGAAGGTTTTGCAA
genomic: ACATGGCCGAACGTGTTGTTGGAACAGGATCATTCGGAATTGTATTCCAGgtatcattgt ... accattctagGCAAAATGCTTGGAAACTGGAGAATCAGTAGCCATTAAGAAGGTTTTGCAA
EST: gi|124960106|gb|EL034797.1|EL034797
EST:     GAATTGTATTCCAG                         GCAAAATGCTTGGAAACTGGAGAATCAGTAGCCATTAAGAAGGTTTTGCAA
genomic: GAATTGTATTCCAGgtatcattgt ... accattctagGCAAAATGCTTGGAAACTGGAGAATCAGTAGCCATTAAGAAGGTTTTGCAA
EST: gi|86048155|gb|DR343910.1|DR343910
EST:     ACATGGCCGAACGTGTTGTTGGAACAGGATCATTCGGAATTGTATTCCAG                         GCAAAATGCTTGGAAACTGGAGAATCAGTAGCCATTAAGAAGGTTTTGCAA
genomic: ACATGGCCGAACGTGTTGTTGGAACAGGATCATTCGGAATTGTATTCCAGgtatcattgt ... accattctagGCAAAATGCTTGGAAACTGGAGAATCAGTAGCCATTAAGAAGGTTTTGCAA
EST: gi|86048167|gb|DR343922.1|DR343922
EST:     ACATGGCCGAACGTGTTGTTGGAACAGGATCATTCGGAATTGTATTCCAG                         GCAAAATGCTTGGAAACTGGAGAATCAGTAGCCATTAAGAAGGTTTTGCAA
genomic: ACATGGCCGAACGTGTTGTTGGAACAGGATCATTCGGAATTGTATTCCAGgtatcattgt ... accattctagGCAAAATGCTTGGAAACTGGAGAATCAGTAGCCATTAAGAAGGTTTTGCAA
EST: gi|86048168|gb|DR343923.1|DR343923
EST:     ACATGGCCGAACGTGTTGTTGGAACAGGATCATTCGGAATTGTATTCCAG                         GCAAAATGCTTGGAAACTGGAGAATCAGTAGCCATTAAGAAGGTTTTGCAA
genomic: ACATGGCCGAACGTGTTGTTGGAACAGGATCATTCGGAATTGTATTCCAGgtatcattgt ... accattctagGCAAAATGCTTGGAAACTGGAGAATCAGTAGCCATTAAGAAGGTTTTGCAA
EST: gi|86048165|gb|DR343920.1|DR343920
EST:     ACATGGCCGAACGTGTTGTTGGAACAGGATCATTCGGAATTGTATTCCAG                         GCAAAATGCTTGGAAACTGGAGAATCAGTAGCCATTAAGAAGGTTTTGCAA
genomic: ACATGGCCGAACGTGTTGTTGGAACAGGATCATTCGGAATTGTATTCCAGgtatcattgt ... accattctagGCAAAATGCTTGGAAACTGGAGAATCAGTAGCCATTAAGAAGGTTTTGCAA
EST: gi|86048159|gb|DR343914.1|DR343914
EST:     ACATGGCCGAACGTGTTGTTGGAACAGGATCATTCGGAATTGTATTCCAG                         GCAAAATGCTTGGAAACTGGAGAATCAGTAGCCATTAAGAAGGTTTTGCAA
genomic: ACATGGCCGAACGTGTTGTTGGAACAGGATCATTCGGAATTGTATTCCAGgtatcattgt ... accattctagGCAAAATGCTTGGAAACTGGAGAATCAGTAGCCATTAAGAAGGTTTTGCAA
EST: gi|86048163|gb|DR343918.1|DR343918
EST:     ACATGGCCGAACGTGTTGTTGGAACAGGATCATTCGGAATTGNATTCCAG                         GCAAAATGNTTGGAAACTGGAGAATCANTANCCATTAAGAAGGTTTTGCAA
genomic: ACATGGCCGAACGTGTTGTTGGAACAGGATCATTCGGAATTGTATTCCAGgtatcattgt ... accattctagGCAAAATGCTTGGAAACTGGAGAATCAGTAGCCATTAAGAAGGTTTTGCAA
EST: gi|163975543|gb|ES130057.1|ES130057
EST:     CATGGCCGAACGTGTTGTTTGGAACAGGATCATTCGGAATTGTATTCCAG                         GCAAAATGCTTGGAAACTGGA
genomic: CATGGCCGAACGTGTTGTT-GGAACAGGATCATTCGGAATTGTATTCCAGgtatcattgt ... accattctagGCAAAATGCTTGGAAACTGGA
EST: gi|86048160|gb|DR343915.1|DR343915
EST:     ACATGGCCGAACGTGTTGTTGGAACAGGATCATTCGGAATTGTATTCCAG                         GCAAAATGCTTGGAAACTGGAGAATCAGTAGCCATTAAGAAGGTTTTGCAA
genomic: ACATGGCCGAACGTGTTGTTGGAACAGGATCATTCGGAATTGTATTCCAGgtatcattgt ... accattctagGCAAAATGCTTGGAAACTGGAGAATCAGTAGCCATTAAGAAGGTTTTGCAA
EST: gi|86048169|gb|DR343924.1|DR343924
EST:     ACATGGCCGAACGTGTTGTTGGAACAGGATCATTCGGAATTGTATTCCAG                         GCAAAATGCTTGGAAACTGGAGAATCAGTAGCCATTAAGAAGGTTTTGCAA
genomic: ACATGGCCGAACGTGTTGTTGGAACAGGATCATTCGGAATTGTATTCCAGgtatcattgt ... accattctagGCAAAATGCTTGGAAACTGGAGAATCAGTAGCCATTAAGAAGGTTTTGCAA
EST: gi|152033639|gb|BP560678.2|BP560678
EST:     ACATGGCCGAACGTGTTGTTGGAACAGGATCATTCGGAATTGTATTCCAG                         GCAAAATGCTTGGAAACTGGAGAATCAGTAGCCATTAAGAAGGTTTTGCAA
genomic: ACATGGCCGAACGTGTTGTTGGAACAGGATCATTCGGAATTGTATTCCAGgtatcattgt ... accattctagGCAAAATGCTTGGAAACTGGAGAATCAGTAGCCATTAAGAAGGTTTTGCAA
EST: gi|86048157|gb|DR343912.1|DR343912
EST:     ACATGGCCGAACGTGTTGTTGGAACAGGATCATTCGGAATTGTATTCCAG                         GCAAAATGCTTGGAAACTGGAGAATCAGTAGCCATTAGGAAGGTTTTGCAA
genomic: ACATGGCCGAACGTGTTGTTGGAACAGGATCATTCGGAATTGTATTCCAGgtatcattgt ... accattctagGCAAAATGCTTGGAAACTGGAGAATCAGTAGCCATTAAGAAGGTTTTGCAA
EST: gi|125113455|gb|EL164266.1|EL164266
EST:     ACATGGCCGAACGTGTTGTTGGAACAGGATCATTCGGAATTGTATTCCAG                         GCAAAATGCTTGGAAACTGGAGAATCAGTA
genomic: ACATGGCCGAACGTGTTGTTGGAACAGGATCATTCGGAATTGTATTCCAGgtatcattgt ... accattctagGCAAAATGCTTGGAAACTGGAGAATCAGTA
EST: gi|86048156|gb|DR343911.1|DR343911
EST:     ACATGGCCGAACGTGTTGTTGGAACAGGATCATTCGGAATTGTATTCCAG                         GCAAAATGCTTGGAAACTGGAGAATCAGTAGCCATTAAGAAGGTTTTGCAA
genomic: ACATGGCCGAACGTGTTGTTGGAACAGGATCATTCGGAATTGTATTCCAGgtatcattgt ... accattctagGCAAAATGCTTGGAAACTGGAGAATCAGTAGCCATTAAGAAGGTTTTGCAA