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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AGACTCTGTCTGGCACTGGAGCCTGCCGGCTCTTTGCAGACTTCCAGAAACGTTTTTCTCCTGGTTCACAGATCTACATTCCTGTTCCAACCTGGTCCAAgtgagtttcctacagttgatttgatcatttctcatgttaacctcaacggtctactttgtaagtgtggccaagcttcttttgcttcccaaaaataacatggtttatgttttctcttatgaatag

Basic information

species Arabidopsis thaliana
transcript AT2G30970.1
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT2G30970.2 (Arabidopsis thaliana), 5'ss of exon 4
lower sequence: GRMZM2G146677_T01 (Zea mays), 5'ss of exon 3
AGACTCTGTCTGGCACTGGAGCCTGCCGGCTCTTTGCAGACTTCCAGAAACGTTTTTCTCCTGGTTCACAGATCTACATTCCTGTTCCAACCTGGTCCAAgtgagtt-------------tcctacagttgatttgatcatttctcatgttaacctcaacggtctactttgtaagtgtggccaagcttcttttgcttcccaaaaataacatggtttatgttttctcttatgaatag------------------------------------------
|| | || || |||||||| ||||||||||||||||| || ||||| || |||||||  || | ||| ||||||||||| ||    ||||| ||||||||||||||               || | | || |||    || | | |       || | ||  || | || ||  | | |     |    ||   ||   |  |  |||||| |    |  ||     | | | |                                            
AGGCGCTTTCAGGCACTGGTGCCTGCCGGCTCTTTGCTGATTTCCAAAAGCGTTTTTTGCCGGATTCGCAGATCTACATACCAACACCAACGTGGTCCAAgtgagtcgatcttgctgtgaccccaaatttcattcaggcactgcaccgcccggcccccaccctcaagttcgtttgggggagagggacggttaatctcaacttatgtaacattgacctttcttgtcagtgttatttacttacacccttatattggtttataatgtggggacttctccag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|301502912|gb|HO208452.1|HO208452
EST:     CGTTTTTCTCCTGGTTCACAGATCTACATTCCTGTTCCAACCTGGTCCAA                         CCACCACAACATCTGGAAAGATGCACAAGTCCCTCAAAAGACATATCATTA
genomic: CGTTTTTCTCCTGGTTCACAGATCTACATTCCTGTTCCAACCTGGTCCAAgtgagtttcc ... ttatgaatagCCACCACAACATCTGGAAAGATGCACAAGTCCCTCAAAAGACATATCATTA
EST: gi|116454920|gb|EG497512.1|EG497512
EST:     CGTTTTTCTCCTGGTTCACAGATCTACATTCCTGTTCCAACCTGGTCCAA                         CCACCACAACATCTGGAAAGATGCACAAGTCCCTCAAAAGACATATCATTA
genomic: CGTTTTTCTCCTGGTTCACAGATCTACATTCCTGTTCCAACCTGGTCCAAgtgagtttcc ... ttatgaatagCCACCACAACATCTGGAAAGATGCACAAGTCCCTCAAAAGACATATCATTA