Sequence
atgc intronic sequence ATGC exonic sequenceAAGCAGTTTAAGAGGTCTATGACTAAGAAATCACATTCATGGTGGTGGGATAGTCACAATTGTCCCAAGAACTCAAAATGGCTTGCAGAGAATCTAGAAAgtatgttgcttcacttagtattgagatctccacttactcaaaaagaacaaaatctgatgttttctttcttgttcttgttttggtttctcag
Basic information
species | Arabidopsis thaliana |
transcript | AT2G30500.2 |
intron # | 3 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: AT2G30500.2 (Arabidopsis thaliana), 5'ss of exon 3
lower sequence: LOC_Os01g07360.1 (Oryza sativa), 5'ss of exon 2
AAGCAGTTTAAGAGGTCTATGACTAAGAAATCACATTCATGGTGGTGGGATAGTCACAATTGTCCCAAGAACTCAAAATGGCTTGCAGAGAATCTAGAAAgtatgttgcttcactta--------gtattgagatctccacttactcaaaaagaacaaaatctgatgttttctttcttgttcttgttttggtttctcag--
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CCACCTTTGGAGAGGAACCCTACCAAGAAGCGCCACTCGTGGTGGTGGGACAGTCACATTAGCCCTAAGAACTCTAAATGGCTTGCAGAAAATCTTGAAGgtgagctgaaacttttacagggaaaataatgagat-tgcattgtcttagtactcctactgttatgcgttttttttgtggagatactactcatatcaatgca
upper sequence: AT2G30500.2 (Arabidopsis thaliana), 5'ss of exon 3
lower sequence: LOC_Os01g07370.2 (Oryza sativa), 5'ss of exon 1
AAGCAGTTTAAGAGGTCTATGACTAAGAAATCACATTCATGGTGGTGGGATAGTCACAATTGTCCCAAGAACTCAAAATGGCTTGCAGAGAATCTAGAAAgta-----tgttgcttc----acttagta-----ttgagatctccacttact---caaaaagaacaaaatctgatgttttctttct-tgttcttgttttggtttctcag-----------------------------------------------------------
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AAGCGCATGCAAAGGATGCCAACAAGGAAGTCCCATTCATGGTGGTGGGACAGCCATATTAGTCCCAAGAACTCCAAATGGTTAGCCGAGAACCTAGAAGgtaaagcctcatgtttcgggaatgcaggatgtactagtgattctttattatttgccagaagtagcaatatttaggaccttatttatgtggttcactaatatttcatcctgcaaaacaactatgcatagcacaactgattcttactataacatttttctcaacaaacagMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|124995352|gb|EL067621.1|EL067621EST: TAGTCACAATTGTCCCAAGAACTCAAAATGGCTTGCAGAGAATCTAGAAA AGATAGGATGATCGAGTGAACCACATGTTAA
genomic: TAGTCACAATTGTCCCAAGAACTCAAAATGGCTTGCAGAGAATCTAGAAAgtatgttgct ... ggtttctcagAGAT-GGATGATCGAGTGAACCACATGTTAA
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
AAGCAGTTTAAGAGGTCTATGACTAAGAAATCACATTCATGGTGGTGGGATAGTCACAATTGTCCCAAGAACTCAAAATGGCTTGCAGAGAATCTAGAAAgtatgttgcttcacttagtattgagatctccacttactcaaaaagaacaaaatctgatgttttctttcttgttcttgttttggtttctcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAC