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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTTGAATCAACACTAGCGATGCAAAATCTTCAACCGAAAATCAAAGCGATTCAACAACGTTACGCAGGAAATCAGgtgagtttctttggatagagaatgagttacttgtggatgacgagtctgatttgtttgttctgtttttggatatatag

Basic information

species Arabidopsis thaliana
transcript AT2G28800.4
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT2G28800.4 (Arabidopsis thaliana), 5'ss of exon 3
lower sequence: GLYMA11G14960.1 (Glycine max), 5'ss of exon 3
GTTGAATCAACACTAGCGATGCAAAATCTTCAACCGAAAATCAAAGCGATTCAACAACGTTACGCAGGAAATCAGgtgagtttctttggatagagaatgagttacttgtg-gatgacgagtctgatttgtttgttctgtttttggatatatag---------------------------------------------
|||||||| |||||||| ||||||||||||||||| ||||| || || |||||| |  | || || || |||||||||||     |||  | |  | |  |   |  ||  |||  |||||     ||| || |  ||| | |  | | | |                                              
GTTGAATCTACACTAGCTATGCAAAATCTTCAACCAAAAATTAAGGCCATTCAAGATAGATATGCTGGCAATCAGgtgagggatgttgt-tggttattaggcatccagtttgatctcgagtaaatattgattttgttgtatgttaaaacaaaagcattgttctttctaaactattcattttgttgccctctttttaag

upper sequence: AT2G28800.4 (Arabidopsis thaliana), 5'ss of exon 3
lower sequence: Vv06s0004g04460.t01 (Vitis vinifera), 5'ss of exon 3
GTTGAATCAACACTAGCGATGCAAAATCTTCAACCGAAAATCAAAGCGATTCAACAACGTTACGCAGGAAATCAGgt-------------gagtttctttggatagagaatgagttacttgtggatgacgagtctg-atttgtttgttctgtttttggatatatag----------
|||||||||||||| || ||||||||||||||||| || ||||| || |||||| || | ||    || ||||||||               |||   || || | || |  | || ||| |   | |||||| |  | |  ||   | | || |||    |  |           
GTTGAATCAACACTGGCCATGCAAAATCTTCAACCAAAGATCAAGGCCATTCAAGAAAGATATAAGGGCAATCAGgttggtacatcctcaaggttcaatttgagaaagtaccattttcttttatct-acgagtgtacaatcattacattttttattgacagtgaaaactgcactca
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|125217470|gb|EL231553.1|EL231553
EST:     ATCTTCAACCGAAAATCAAAGCGATTCAACAACGTTACGCAGGAAATCAG                         GAGAGGATACAACTAGAGAC
genomic: ATCTTCAACCGAAAATCAAAGCGATTCAACAACGTTACGCAGGAAATCAGgtgagtttct ... ggatatatagGAGAGGATACAACTAGAGAC
EST: gi|125074232|gb|EL138247.1|EL138247
EST:     ATCTTCAACCGAAAATCAAAGCGATTCAACAACGTTACGCAGGAAATCAG                         GAGAGGATACAACTAGAGACATCGACGATTGTATAAACAAGCTGGTGTTAA
genomic: ATCTTCAACCGAAAATCAAAGCGATTCAACAACGTTACGCAGGAAATCAGgtgagtttct ... ggatatatagGAGAGGATACAACTAGAGACATCG-CGATTGTATAAACAAGCTGGTGTTAA
EST: gi|125121521|gb|EL168659.1|EL168659
EST:     CCGAAAATCAAAGCGATTCAACAACGTTACGCAGGAAATCAG                         GAGAGGATACAACTAGAGACATCGCGATTGTATAAACAAGCTGGTGTTAAT
genomic: CCGAAAATCAAAGCGATTCAACAACGTTACGCAGGAAATCAGgtgagtttct ... ggatatatagGAGAGGATACAACTAGAGACATCGCGATTGTATAAACAAGCTGGTGTTAAT
EST: gi|125248920|gb|EL263005.1|EL263005
EST:     ATCTTCAACCGAAAATCAAAGCGATTCAACAACGTTACGCAGGAAATCAG                         GAGAGGATACAACTAGAGACATCGCGATTG
genomic: ATCTTCAACCGAAAATCAAAGCGATTCAACAACGTTACGCAGGAAATCAGgtgagtttct ... ggatatatagGAGAGGATACAACTAGAGACATCGCGATTG