1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
GAAAAGAATGAAGTAATCGTTGCGGATAATTACTTCACAGGATCAAAAGACAATCTCAAGAAATGGATTGGTCATCCAAGATTTGAGCTAATTCGTCATGgtatagtatcttcttaattaatcaaacttacttaatactcattaaccaaaacaatgcattaatactcattcttgtgattttttcag
species | Arabidopsis thaliana |
transcript | AT2G28760.1 |
intron # | 3 |
splice site | 5' |
intron type | U2 |
EST: CAATCTCAAGAAATGGATTGGTCATCCAAGATTTGAGCTAATTCGTCATG ATGTGGCTGAACCTCTTTTCGTCGAGGTTGATCAAATCTACCATTTAGCATEST: gi|86061221|gb|DR356978.1|DR356978
genomic: CAATCTCAAGAAATGGATTGGTCATCCAAGATTTGAGCTAATTCGTCATGgtatagtatc ... attttttcagATGTGACTGAACCTCTTTTCGTCGAGGTTGATCAAATCTACCATTTAGCAT
EST: CAATCTCAAGAAATGGATTGGTCATCCAAGATTTGAGCTAATTCGTCATG ATGTGGCTGAACCTCTTTTCGTCGAGGTTGATCAAATCTACCATTTAGCATEST: gi|152038570|gb|AV831033.2|AV831033
genomic: CAATCTCAAGAAATGGATTGGTCATCCAAGATTTGAGCTAATTCGTCATGgtatagtatc ... attttttcagATGTGACTGAACCTCTTTTCGTCGAGGTTGATCAAATCTACCATTTAGCAT
EST: CAATCTCAAGAAATGGATTGGTCATCCAAGATTTGAGCTAATTCGTCATG ATGTGACTGAACCTCTTTTCGTCGAGGTTGATCAAATCTACCATTTAGCATEST: gi|86061222|gb|DR356979.1|DR356979
genomic: CAATCTCAAGAAATGGATTGGTCATCCAAGATTTGAGCTAATTCGTCATGgtatagtatc ... attttttcagATGTGACTGAACCTCTTTTCGTCGAGGTTGATCAAATCTACCATTTAGCAT
EST: CAATCTCAAGAAATGGATTGGTCATCCAAGATTTGAGCTAATTCGTCATG ATGTGGCTGAACCTCTTTTCGTCGAGGTTGATCAAATCTACCATTTAGCAT
genomic: CAATCTCAAGAAATGGATTGGTCATCCAAGATTTGAGCTAATTCGTCATGgtatagtatc ... attttttcagATGTGACTGAACCTCTTTTCGTCGAGGTTGATCAAATCTACCATTTAGCAT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GAAAAGAATGAAGTAATCGTTGCGGATAATTACTTCACAGGATCAAAAGACAATCTCAAGAAATGGATTGGTCATCCAAGATTTGAGCTAATTCGTCATGgtatagtatcttcttaattaatcaaacttacttaatactcattaaccaaaacaatgcattaatactcattcttgtgattttttcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA