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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TAGATGGGATACTTGGGGAAGGTTCGTTGAGCGAAGTGTTGCTTATCAACCTTGGATATGGACTGCTGGCAACCACGAAATCGACTTCGTTCCTGACATTgtaatatttaaatttcttcctttcttttatcacttctagggtaattacttaaacttaacatgaagagtctgttttgtag

Basic information

species Arabidopsis thaliana
transcript AT2G27190.1
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT2G27190.1 (Arabidopsis thaliana), 5'ss of exon 3
lower sequence: Vv18s0001g13340.t01 (Vitis vinifera), 5'ss of exon 4
TAGATGGGATACTTGGGGAAGGTTCGTTGAGCGAAGTGTTGCTTATCAACCTTGGATATGGACTGCTGGCAACCACGAAATCGACTTCGTTCCTGACATTgtaatatttaaatttcttcctttcttttatcacttctagggtaattact---taaacttaacatgaagagtctgtt--ttgtag----------------
 ||||||||||| |||||||| ||    ||| |||||| |||||||||||||||||| |||||||| || || |||||||| || || | ||||||  ||||||   ||   | ||    |  || || | |         |  ||  |   |    || || ||||   | |  |  ||||                  
CAGATGGGATACATGGGGAAGATTTACAGAGAGAAGTGCTGCTTATCAACCTTGGATTTGGACTGCAGGAAATCACGAAATAGATTTTGCTCCTGATCTTgtaagcattgtgtctcccgttccctattgttaagcagtatttcttttttctgtgcttttgacttgaaagcttttctaattgtgaccttggtgctttcgga

upper sequence: AT2G27190.1 (Arabidopsis thaliana), 5'ss of exon 3
lower sequence: Vv18s0001g13330.t01 (Vitis vinifera), 5'ss of exon 4
TAGATGGGATACTTGGGGAAGGTTCGTTGAGCGAAGTGTTGCTTATCAACCTTGGATATGGACTGCTGGCAACCACGAAATCGACTTCGTTCCTGACATTgtaatatttaaatttcttcctttcttttat----cacttctagggta----attacttaaacttaacatgaagagt----ctgttttgtag---------
 ||||||||||| |||||||| ||  | ||| | |||  |||||||||||||||||| |||||||  || || |||||||| || || | |||||| |||||||   |||  | |  |  | ||  || |    || |  |   |||          | ||  |  | ||  | ||    || ||||| |          
CAGATGGGATACATGGGGAAGATTTATAGAGAGGAGTTGTGCTTATCAACCTTGGATTTGGACTGTAGGAAATCACGAAATTGATTTTGCTCCTGATATTgtaaggattatgtcttctattctccattgtaaggcaatattcatgtatcctgccctatgaatatctcctgttgggttaatctattttgcatccaattgat
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|124829633|gb|EH914224.1|EH914224
EST:     TGGACTGCTGGCAACCACGAAATCGACTTCGTTCCTGACATT                         GGTGAAATAGAACCATTCAAGCCTTTTATGAATCGGTATCATACGCCACAT
genomic: TGGACTGCTGGCAACCACGAAATCGACTTCGTTCCTGACATTgtaatattta ... tgttttgtagGGTGAAATAGAACCATTCAAGCCTTTTATGAATCGGTATCATACGCCACAT