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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AGCTTGGAGTACTTTGCTGGAGACTTGATGCTGATAACTATGAAACCGATGAGGAATTGAAAAGGATCCGCGAATCTCGTGGTTACTCCTACATGgtttgtgacatttatttgatgcctttttttaatatcttcctttgtttggtctttttttttaacaaaaaataaatcttcgtttgttagttgattattaaatattcgtttttgattcgcaaacatttggatgtttggttttag

Basic information

species Arabidopsis thaliana
transcript AT2G26400.1
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT2G26400.1 (Arabidopsis thaliana), 5'ss of exon 3
lower sequence: Vv05s0020g04080.t01 (Vitis vinifera), 5'ss of exon 3
AGCTTGGAGTACTTTGCTGGAGACTTGATGCTGATAACTATGAAACCGATGAGGAATTGAAAAGGATCCGCGAATCTCGTGGTTACTCCTACATGgtttgtgacatttatttgatgcctttttttaatatcttcctttgtttggtctttttttttaacaaaaaataaatcttcgtttgttagttgattattaaatattcgtttttgattcgcaaac--atttggatgtttggttttag
| |||||||| ||  ||||| || | |||||||||||||||||||| |||||||||||||| | ||| || ||| | ||||| |||||||||||||||||| ||  | | ||  |   ||  || |  |        |  ||   |  || ||| |              ||  |    |||   ||  |||| | |   |  |  |   | |||   || |  |  |||   |  ||
AACTTGGAGTGCTCAGCTGGCGATTAGATGCTGATAACTATGAAACAGATGAGGAATTGAAGAAGATTCGTGAAGCCCGTGGATACTCCTACATGgtttgtcac-ctaacttacttttttcattcagaaaaaggaaattgttctccaattctttcagtttgtgccttgaatttataccatagcctatagttaagtctgtataatataagtggaaatggatgtaaacatttt-ctccag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|116474360|gb|EG516952.1|EG516952
EST:     CCGATGAGGAATTGAAAAGGATCCGCGAATCTCGTGGTTACTCCTACATG                         GACTTATGTGAGGTGTGTCCAGAGAAGCTTCCAAACTATGAAGAAAAAGTA
genomic: CCGATGAGGAATTGAAAAGGATCCGCGAATCTCGTGGTTACTCCTACATGgtttgtgaca ... ttggttttagGACTTATGTGAGGTGTGTCCAGAGAAGCTTCCAAACTATGAAGAAAAAGTA
EST: gi|125054771|gb|EL125305.1|EL125305
EST:     TCTCGTGGTTACTCCTACATG                         GACTTATGTGAGGTGTGTCCAGAGAAGCTTCCAAACTATGAAGAAAAAGTA
genomic: TCTCGTGGTTACTCCTACATGgtttgtgaca ... ttggttttagGACTTATGTGAGGTGTGTCCAGAGAAGCTTCCAAACTATGAAGAAAAAGTA