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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GATAGCTCTCGGAGCCGCCAAAGGTTTAGCTTTTCTCCATGAAGCAGAGAAACCTGTCATCTACAGAGACTTTAAAACCTCTAACATATTGTTAGACTCCgtgagtttttttttcctttttaaattttgtatccactattaaatcaaattaaagtggtatttctcaactgactctttgatatttcag

Basic information

species Arabidopsis thaliana
transcript AT2G26290.1
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT2G26290.1 (Arabidopsis thaliana), 5'ss of exon 3
lower sequence: LOC_Os03g08170.1 (Oryza sativa), 5'ss of exon 3
GATAGCTCTCGGAGCCGCCAAAGGTTTAGCTTTTCTCCATGAAGCAGAGAAACCTGTCATCTACAGAGACTTTAAAACCTCTAACATATTGTTAGACTCCgtgagttttt-------------ttttcctttttaaattttgtatccactattaaatcaaattaaagtggtatttctcaactgactctttgatatttcag
||| ||  | || ||||| ||||| || || |||||||||||||| ||||| || ||||||||| ||||||| || ||||| ||||| ||| ||||||| ||  ||  ||             ||  | |  |   ||  | |||    | || |   |  |         |||   |  ||     |||||| | | | 
GATCGCCATAGGTGCCGCGAAAGGGTTGGCCTTTCTCCATGAAGCCGAGAAGCCGGTCATCTACCGAGACTTCAAGACCTCCAACATCTTGCTAGACTCGgtacgtccttgaccttaattacgttaccatcgtggcatcgtatatgtgttcttcacctacttccccaaaagattgacctgcttgtcatttgatctctaat