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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGTCATCGAAGGTGGAGAGGTGATTATGAAAGCGTGTAAGCCTGCACTCGAGTCTAATTACATCACGAAAGTTATTCACGATTGCAAGCGTGACAGTGAGgtgtctgaactttttgttgacttgttattatagctcatgacatatttatagtttatgacaacatggataattttttttgtactacag

Basic information

species Arabidopsis thaliana
transcript AT2G25910.1
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT2G25910.2 (Arabidopsis thaliana), 5'ss of exon 3
lower sequence: GRMZM2G142984_T01 (Zea mays), 5'ss of exon 3
--------------------------------TGTCATCGAAGGTGGAGAGGTGATTATGAAAGCGTGTAAGCCTGCACTCGAGTCTAATTACATCACGAAAGTTATTCACGATTGCAAGCGTGACAGTGAGgtgtctgaactt---tttgttgacttgt----tattatagctcatgac-atatttatagtttatgacaacatggataattttttttgtactacag-------------
                                ||  || || |||||| | |   ||||  |||| |||||||| ||||| |||||| || | ||||| ||||||||||| ||||| ||  | |||||||||||| || |  ||   ||||   |||| |    |  |||   || |     |  || |||   ||   ||  | ||  |  |   ||  |||  |              
CTTGCATTCCCTGATGCTGTTTACCTAGTTGATGCTATTGAGGGTGGAAAAGAACTTATTCAAGCTTgtaagcccgcacttgagtctgatcatatcaccaaagttattcatgattgtaaaagggacagtgaggtgcctaatgttggatttgagaacttttagcttgctatgtttcctttttgtccttttaggagattgtaaacttgactaactagattaaactttatcacttttttgcag

upper sequence: AT2G25910.2 (Arabidopsis thaliana), 5'ss of exon 3
lower sequence: GRMZM2G142984_T02 (Zea mays), 5'ss of exon 3
TGTCATCGAAGGTGGAGAGGTGATTATGAAAGCGTGTAAGCCTGCACTCGAGTCTAATTACATCACGAAAGTTATTCACGATTGCAAGCGTGACAGTGAGgtgtctgaactt---tttgttgactt----gttattatagctcatgac-atatttatagtttatgacaacatggataattttttttgtactacag-------------
||  || || |||||| | |   ||||  |||| |||||||| ||||| |||||| || | ||||| ||||||||||| ||||| ||  | |||||||||||| || |  ||   ||||   ||||     ||  |||   || |     |  || |||   ||   ||  | ||  |  |   ||  |||  |              
TGCTATTGAGGGTGGAAAAGAACTTATTCAAGCTTGTAAGCCCGCACTTGAGTCTGATCATATCACCAAAGTTATTCATGATTGTAAAAGGGACAGTGAGgtgcctaatgttggatttgagaacttttagcttgctatgtttcctttttgtccttttaggagattgtaaacttgactaactagattaaactttatcacttttttgcag

upper sequence: AT2G25910.2 (Arabidopsis thaliana), 5'ss of exon 3
lower sequence: GLYMA14G10520.1 (Glycine max), 5'ss of exon 3
TGTCATCGAAGGTGGAGAGGTGATTATGAAAGCGTGTAAGCCTGCACTCGAGTCTAATTACATCACGAAAGTTATTCACGATTGCAAGCGTGACAGTGAGgtgtctgaactttttgttgacttgttattatagct--catgacatatttatagtttatg--acaacatggataattttttttgtactacag-------------------------------------------------------------------------------------------
||  || ||||| ||||||| | |||| | |||||||||||||||||| ||||||||||||||||| ||||| ||||| |||||||| || ||||||||||| |||||  | |||| |  |||| |    |   |  | ||     | | | || ||||    ||  ||   ||| ||| ||  |    |                                                                                            
TGCGATTGAAGGGGGAGAGGAGCTTATCATAGCGTGTAAGCCTGCACTTGAGTCTAATTACATCACAAAAGTGATTCATGATTGCAAACGGGACAGTGAGgtctctgatttatttgattgcttgcttccttgcttgccctggtccctcttttgtatatgttgaaatttgtggaatgtttattcaaaggaaaaaaagtgtttgagagccttgacttgtggtcttggcattcaccattttgtctggccatttaaagcacttataaacttcttgttgtttactag

upper sequence: AT2G25910.2 (Arabidopsis thaliana), 5'ss of exon 3
lower sequence: GLYMA17G34990.1 (Glycine max), 5'ss of exon 3
TGTCATCGAAGGTGGAGAGGTGATTATGAAAGCGTGTAAGCCTGCACTCGAGTCTAATTACATCACGAAAGTTATTCACGATTGCAAGCGTGACAGTGAGgtgtctgaactttttgttgacttgttattatagct--catgacatatttatagtttatg--acaacatggataattttttttgtactacag--------------------------------------------------------------------------------------------
||  || ||||| ||||||| | |||| | |||||||||||||||||| ||||||||||||||||| ||||| ||||| |||||||| || ||||||||||| |||||  | |||| |  |||  |    |   |    || |   | | | || ||||    ||  ||   ||| ||| ||  |    |                                                                                             
TGCGATTGAAGGGGGAGAGGAGCTTATCATAGCGTGTAAGCCTGCACTTGAGTCTAATTACATCACAAAAGTGATTCATGATTGCAAACGGGACAGTGAGgtctctgatttatttgattgctttcttccttgcttgctctggcccctcttttgtatatgttgaaatttgtggaatgtttattcaaaggaaacaaagtgtttgagtggcttgacttgtggtattaggcatttaccattttgtctggccatttaaagctcttataaacttcttgttgtttactag

upper sequence: AT2G25910.2 (Arabidopsis thaliana), 5'ss of exon 3
lower sequence: Vv04s0008g00650.t01 (Vitis vinifera), 5'ss of exon 3
TGTCATCGAAGGTGGAGAGGTGATTATGAAAGCGTGTAAGCCTGCACTCGAGTCTAATTACATCACGAAAGTTATTCACGATTGCAAGCGTGACAGTGAGgtgtctgaact-ttttgttgacttgt-tattatagctcatgacatatttatagtttatgacaacatggataattttttttgtactacag
||  ||  | || |||||| || |||||||||| |||||||||||||| || |||| ||||||||| |||||||||||||||||||| || || || ||||| ||| |    |||| || |||| |  ||   ||| ||| ||||  |   ||| | |||  |  |   |   || |||||||      
TGCTATTCAGGGGGGAGAGATGCTTATGAAAGCCTGTAAGCCTGCACTTGAATCTAGTTACATCACAAAAGTTATTCACGATTGCAAACGAGATAGCGAGgtctctaattgattttatttacttctgcatgtcagcacat-acattgtggcagtctttga--atcttattg--ttattttgtag-----

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|86035177|gb|DR330930.1|DR330930
EST:     AGTCTAATTACATCACGAAAGTTATTCACGATTGCAAGCGTGACAGTGAG                         GCTCTATACTTCCAGTTTGGGATAAGATTGCACAATGTTGTGGACACTCAG
genomic: AGTCTAATTACATCACGAAAGTTATTCACGATTGCAAGCGTGACAGTGAGgtgtctgaac ... tgtactacagGCTCTATACTTCCAGTTTGGGATAAGATTGCACAATGTTGTGGACACTCAG
EST: gi|86035184|gb|DR330937.1|DR330937
EST:     GTCTAATGTACATCACGAAAGTTATTCACGATTGCAAGCGTGACAGTGAG                         GCTCTATACTTCCAGTTTGGGATAAGATTGCACAATGTTGTGGACACTCAG
genomic: GTCTAAT-TACATCACGAAAGTTATTCACGATTGCAAGCGTGACAGTGAGgtgtctgaac ... tgtactacagGCTCTATACTTCCAGTTTGGGATAAGATTGCACAATGTTGTGGACACTCAG
EST: gi|86035180|gb|DR330933.1|DR330933
EST:     AGTCTAATTACATCACGAAAGTTATTCACGATTGCAAGCGTGACAGTGAG                         ACTCTATACTTCCAGTTTGGGATAAGATTGCACAATGTTGTGGACACTCAG
genomic: AGTCTAATTACATCACGAAAGTTATTCACGATTGCAAGCGTGACAGTGAGgtgtctgaac ... tgtactacagGCTCTATACTTCCAGTTTGGGATAAGATTGCACAATGTTGTGGACACTCAG
EST: gi|86035183|gb|DR330936.1|DR330936
EST:     AGTCTAATTACATCACGAAAGTTATTCACGATTGCAAGCGTTACAGTGAG                         GCTCTATACTTCCAGTTTGGGATAAGATTGCACAATGTTGTGGACACTCAG
genomic: AGTCTAATTACATCACGAAAGTTATTCACGATTGCAAGCGTGACAGTGAGgtgtctgaac ... tgtactacagGCTCTATACTTCCAGTTTGGGATAAGATTGCACAATGTTGTGGACACTCAG
EST: gi|86035178|gb|DR330931.1|DR330931
EST:     AGTCTAATTACATCACGAAAGTTATTCACGATTGCAAGCGTGACAGTGAG                         GCTCTATACTTCCAGTTTGGGATAAGATTGCACAATGTTGTGGACACTCAG
genomic: AGTCTAATTACATCACGAAAGTTATTCACGATTGCAAGCGTGACAGTGAGgtgtctgaac ... tgtactacagGCTCTATACTTCCAGTTTGGGATAAGATTGCACAATGTTGTGGACACTCAG
EST: gi|86035173|gb|DR330926.1|DR330926
EST:     AGTCTAATTACATCACGAAAGTTATTCACGATTGCAAGCGTGACAGTGAG                         GCTCTATACTTCCAGTTTGGGATAAGATT
genomic: AGTCTAATTACATCACGAAAGTTATTCACGATTGCAAGCGTGACAGTGAGgtgtctgaac ... tgtactacagGCTCTATACTTCCAGTTTGGGATAAGATT
EST: gi|125068148|gb|EL134393.1|EL134393
EST:     AGTCTAATTACATCACGAAAGTTATTCACGATTGCAAGCGTGACAGTGAG                         GCTCTATACTTCCAGTTTGGGATAAGATTGCACAATGTTG
genomic: AGTCTAATTACATCACGAAAGTTATTCACGATTGCAAGCGTGACAGTGAGgtgtctgaac ... tgtactacagGCTCTATACTTCCAGTTTGGGATAAGATTGCACAATGTTG
EST: gi|86035181|gb|DR330934.1|DR330934
EST:     AGTCTAATTACATCACGAAAGTTATTCACGATTGCAAGCGTGACAGTGAG                         GCTCTATACTTCCAGTTTGGGATAAGATTGCACAATGTTGTGGACACTCAG
genomic: AGTCTAATTACATCACGAAAGTTATTCACGATTGCAAGCGTGACAGTGAGgtgtctgaac ... tgtactacagGCTCTATACTTCCAGTTTGGGATAAGATTGCACAATGTTGTGGACACTCAG
EST: gi|86035176|gb|DR330929.1|DR330929
EST:     AGTCTAATTACATCACGAAAGTTATTCACGATTGCAAGCGTGACAGTGAG                         GCTCTATACTTCCAGTTTGGGATAAGATTGCACAATGTTGTGGACACTCAG
genomic: AGTCTAATTACATCACGAAAGTTATTCACGATTGCAAGCGTGACAGTGAGgtgtctgaac ... tgtactacagGCTCTATACTTCCAGTTTGGGATAAGATTGCACAATGTTGTGGACACTCAG
EST: gi|86035179|gb|DR330932.1|DR330932
EST:     AAGCGTGACAGTGAG                         GCTCTATACTTCCAGTTTGGGATAAGATTGCACAATGTTGTGGACACTCAG
genomic: AAGCGTGACAGTGAGgtgtctgaac ... tgtactacagGCTCTATACTTCCAGTTTGGGATAAGATTGCACAATGTTGTGGACACTCAG
EST: gi|86035186|gb|DR330939.1|DR330939
EST:     AGTCTAATTACATCACGAAAGTTATTCACGATTGCAAGCGTGACAGTGAG                         GCTCTATACTTCCAGTTTGGGATAAGATTGCACAATGTTGTGGACACTCAG
genomic: AGTCTAATTACATCACGAAAGTTATTCACGATTGCAAGCGTGACAGTGAGgtgtctgaac ... tgtactacagGCTCTATACTTCCAGTTTGGGATAAGATTGCACAATGTTGTGGACACTCAG
EST: gi|86035185|gb|DR330938.1|DR330938
EST:     AGTCTAATTACATCACGAAAGTTATTCACGATTGCAAGCGTGACAGTGAG                         ACTCTATACTTCCAGTTTGGGATAAGATTGCACAATGTTGTGGACACTCAG
genomic: AGTCTAATTACATCACGAAAGTTATTCACGATTGCAAGCGTGACAGTGAGgtgtctgaac ... tgtactacagGCTCTATACTTCCAGTTTGGGATAAGATTGCACAATGTTGTGGACACTCAG
EST: gi|86035174|gb|DR330927.1|DR330927
EST:     AGTCTAATTACATCACGAAAGTTATTCACGATTGCAAGCGTGACAGTGAG                         GCTCTATACTTCCAGTTTGGGATAAGATTGCACAATGTTGTGGACACTCAG
genomic: AGTCTAATTACATCACGAAAGTTATTCACGATTGCAAGCGTGACAGTGAGgtgtctgaac ... tgtactacagGCTCTATACTTCCAGTTTGGGATAAGATTGCACAATGTTGTGGACACTCAG
EST: gi|86035182|gb|DR330935.1|DR330935
EST:     AGTCTAATTACATCACGAAAGTTATTCACGATTGCAAGCGTGACAGTGAG                         GCTCTATACTTCCAGTTTGGGATAAGATTGCACAATGTTGTGGACACTCAG
genomic: AGTCTAATTACATCACGAAAGTTATTCACGATTGCAAGCGTGACAGTGAGgtgtctgaac ... tgtactacagGCTCTATACTTCCAGTTTGGGATAAGATTGCACAATGTTGTGGACACTCAG