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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TTTGGTCTTTTACAGAGGACGAGCTCCTCGTGGGGAGAAGACTTGTTGGGTCATGCATGAGTATCGACTTCACTCCAAGTCCTCATATAGAACCTCCAAGgtacactattttcctttgttattcttctaccaaatatacattatgtcatggtcatgatttaaatacgagtcttgaatgtttttttttttttgtgggattagtgtttcacaagaagaatatacataaactcaacaattctcatttcatttttcatgatgtaacatgtaaatgcag

Basic information

species Arabidopsis thaliana
transcript AT2G24430.1
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT2G24430.1 (Arabidopsis thaliana), 5'ss of exon 3
lower sequence: LOC_Os09g32260.2 (Oryza sativa), 5'ss of exon 3
TTTGGTCTTTTACAGAGGACGAGCTCCTCGTGGGGAGAAGACTTGTTGGGTCATGCATGAGTATCGACTTCACTCCAAGTCCTCATATAGAACCTCCAAGgtacactattttcctttgttattcttctaccaaatatac-attatgtcatggtcatgatttaaat-acgagtcttgaatgtttttttttttttgtgggattagtgtttcacaagaagaatatacataaactcaacaattctcatttcatttttcatgatgtaacatgtaaatgcag
  | || || |||| |||| | |||||  | || ||||| ||   |||||||||||||||||| ||||| |||||||| ||       | | |   ||||||| || |||  |  ||| || | || |  ||||   || | |||  ||    | | | | || | ||  || || | ||   | ||||| |  ||       |  || | |   |  ||||  | |                                                 
CCTAGTGTTCTACAAAGGAAGGGCTCCAAGAGGTGAGAAAACCAATTGGGTCATGCATGAGTACCGACTCCACTCCAAATCAATCCCCAAATCAAACAAGgtaaacaatt--caattgatagtatttt--caaactcactactata-cacatgcttcactaaatttacttgtattaattgaaatgtttttgtgatgcatcattttgtttatactcattatatg-acag------------------------------------------------

upper sequence: AT2G24430.1 (Arabidopsis thaliana), 5'ss of exon 3
lower sequence: GRMZM2G008374_T02 (Zea mays), 5'ss of exon 2
TTTGGTCTTTTACAGAGGACGAGCTCCTCGTGGGGAGAAGACTTGTTGGGTCATGCATGAGTATCGACTTCACTCCAAGTCCTCATATAGAACCTCCAAGgtacactattttcctttgttattc-ttctaccaaatatacattatgtcatggtcatgatttaaatacgagtcttgaatgtttttttttttttgtgggattagtgtttcacaagaagaatatacataaactcaacaattctcatttcatttttcatgatgtaacatgtaaatgcag
  |||| || |||| |||| |||||||||| || ||||||||    |||||||||||||||||||| || |||||||| ||       | | |   ||||||||||       | |  |||       |||   | ||| ||     |||  |  | |   || | |      |  ||        ||  |  |||   |||                                                                         
CCTGGTGTTCTACAAAGGAAGAGCTCCTCGGGGTGAGAAGACGAACTGGGTCATGCATGAGTATCGCCTGCACTCCAAATCACTCCCCAAATCTAACAAGgtacacgcacgcacgtgcttacggaccttacggtacatatatacatacatatt--tcacgaaattgcttaatgttgatcagcggaattaatcatggtcctag-------------------------------------------------------------------------

upper sequence: AT2G24430.1 (Arabidopsis thaliana), 5'ss of exon 3
lower sequence: GRMZM2G008374_T01 (Zea mays), 5'ss of exon 2
TTTGGTCTTTTACAGAGGACGAGCTCCTCGTGGGGAGAAGACTTGTTGGGTCATGCATGAGTATCGACTTCACTCCAAGTCCTCATATAGAACCTCCAAGgtacactattttcctttgttattcttctaccaaatatacattatgtcatggtcatgatttaaatacgagtcttgaatgtttttttttttttgtgggattagtgtt--tcacaagaagaat--atacataaactcaacaattctcatttcatttttcatgatgtaacatgtaaatgcag
  |||| || |||| |||| |||||||||| || ||||||||    |||||||||||||||||||| || |||||||| ||       | | |   ||||||||||       | |  |||     ||  |     ||||| || | |    |||  || |   |  | |  | ||||||  |        | || |||| |  |  ||  |   |||||  ||| | ||| |||  ||      |||   || ||    | |  ||       ||||
CCTGGTGTTCTACAAAGGAAGAGCTCCTCGGGGTGAGAAGACGAACTGGGTCATGCATGAGTATCGCCTGCACTCCAAATCACTCCCCAAATCTAACAAGgtacacgcacgcacgtgcttacggaccttacgg---tacat-atat-acatacatatttcacgaa--attgcttaatgttgatca------gcggaattaatcatggtcctagctagaatggatagacaaattcatgaagatgttttttggttatct--gtatggcactggcgcgcag