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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GACATTTTAACCTAAGTAATTTCGAAGATGGTGTATTGTCATCTTCATTTATGGTTGGACTTCTTATTGCATCACCAATCTTTGCTTCATTGGCAAAAAGgtgatcagaaagaactttcatttttgttatttttctctcttctgattgatgtctaaaaaacttattaaagtggtttcgtttgtgtttagtgcagcttcaatccatttag

Basic information

species Arabidopsis thaliana
transcript AT2G22730.1
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT2G22730.1 (Arabidopsis thaliana), 5'ss of exon 3
lower sequence: GLYMA09G33680.1 (Glycine max), 5'ss of exon 3
GACATTTTAACCTAAGTAATTTCGAAGATGGTGTATTGTCATCTTCATTTATGGTTGGACTTCTTATTGCATCACCAATCTTTGCTTCATTGGCAAAAAGgtga-tcagaaagaactttcatttttgttatttttctctcttctgattgatgtctaaaaaacttattaaagtggtttcgtttgtgtttagtgcagcttcaatccatttag
|  |||||||| | |  |||||  ||||||| ||  |||||||| ||||||||||||||||||| ||||| || ||||| ||||||||  |||| ||||||||| |      |   | |  |   |  |   |   |||||    |||  ||  |      |   ||  | |||     |     | || ||||  |||| |   |  ||
GGGATTTTAACTTGAACAATTTTCAAGATGGAGTTCTGTCATCTGCATTTATGGTTGGACTTCTAATTGCTTCCCCAATATTTGCTTCTCTGGCCAAAAGgtgaattgcttcgtgttgtggtagcttcttcctgcttctctcacaattcgtgctt------cccctttcattgg----atggtcatctaatgcattttca-tgtttgcag

upper sequence: AT2G22730.1 (Arabidopsis thaliana), 5'ss of exon 3
lower sequence: Vv07s0205g00120.t01 (Vitis vinifera), 5'ss of exon 3
GACATTTTAACCTAAGTAATTTCGAAGATGGTGTATTGTCATCTTCATTTATGGTTGGACTTCTTATTGCATCACCAATCTTTGCTTCATTGGCAAAAAGgtgatcagaaagaactttcatttttgttatttttctctcttctgattgatgtctaaaaaactt--attaaagtggtttcgtttgtgtttagtgcagcttcaatccatttag
|  |||||||  | || || ||| | |||||||| || |||||| |||| ||||||||||||||| | || || ||||| ||||| || |||||||| ||||||          | |||  || ||| |||     |||| ||  || |||| | |||   ||  ||   |   |    |       | |     |||  |  | |||   
GGGATTTTAATTTGAGCAACTTCCAGGATGGTGTTTTATCATCTGCATTCATGGTTGGACTTCTTGTAGCTTCTCCAATATTTGCATCCTTGGCAAAGAGgtgaatg-------ccttctattatgtcattggatactctcctcctt-atgtttcaaagtttttgatagtaaaaggcatgaacaaaataaaatttgctgaagacaatt---