Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ACATCACTGCGGGAGCTGACAACTCTCGGTATCAAGAATGCAGAGACTCTGGCCATCCCTAGTGTCAGGAACGATgtaaggttctgtcttgttaagcctatctttggcaagaattgatttattgaggtttgtagtgtatgttaattaaggttctctgaattctgattttaagtttgagtaatgcag

Basic information

species Arabidopsis thaliana
transcript AT2G21960.1
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT2G21960.1 (Arabidopsis thaliana), 5'ss of exon 3
lower sequence: GLYMA08G14970.1 (Glycine max), 5'ss of exon 3
ACATCACTGCGGGAGCTGACAACTCTCGGTATCAAGAATGCAGAGACTCTGGCCATCCCTAGTGTCAGGAACGATgtaaggttctg---tcttgttaagcctatctttggcaagaat---tgatttattgaggtttgtagtgtatgttaattaaggttctctgaattctga---ttttaagtttgagtaatgcag------------------------------------------------------------------------------
|||||||| ||||||||||||| ||| || || || || ||||||| ||| || || ||||||||||| |||||||| || ||| |   |||| | |  | ||   |      ||||      |   || |  | |||| | | |    ||   | || | |  ||   |    |  ||| ||  | |||  |                                                                                
ACATCACTCCGGGAGCTGACAAGTCTAGGAATTAAAAACGCAGAGAATCTTGCAATTCCTAGTGTCAGAAACGATgtgagtttcagaaatcttttaattcttagtatcaaatggaatgagcagtgcttttaaatatgtaatatgtaaatatctcgattgtatacatgtggcaactagtaatttctattaagactttcaatcttgaaaacacatgtttcttgtaagttgtatgcattcttaaccaacaagtaacaaaaatctttgatggtgcag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|124985186|gb|EL057792.1|EL057792
EST:     TCGGTATCAAGAATGCAGAGACTCTGGCCATCCCTAGTGTCAGGAACGAT                         GCGGCTTTTCTTTTCACAGTAGT
genomic: TCGGTATCAAGAATGCAGAGACTCTGGCCATCCCTAGTGTCAGGAACGATgtaaggttct ... agtaatgcagGCGGCTTTTCTTTTCACAGTAGT
EST: gi|86072272|gb|DR368029.1|DR368029
EST:     TCGGTATCAAGAATGCAGAGACTCTGGCCATTCCTAGTGTCAGGAACGAT                         GCGGCTTTTCTTTTCACAGTAGTCGGATCAACTGGGTTCATAGCTGTACTT
genomic: TCGGTATCAAGAATGCAGAGACTCTGGCCATCCCTAGTGTCAGGAACGATgtaaggttct ... agtaatgcagGCGGCTTTTCTTTTCACAGTAGTCGGATCAACTGGGTTCATAGCTGTACTT
EST: gi|125139146|gb|EL178064.1|EL178064
EST:     TCGGTATCAAGAATGCAGAGACTCTGGCCATCCCTAGTGTCAGGAACGAT                         GCGGCTTTTCTTT-CACAGTAGT
genomic: TCGGTATCAAGAATGCAGAGACTCTGGCCATCCCTAGTGTCAGGAACGATgtaaggttct ... agtaatgcagGCGGCTTTTCTTTTCACAGTAGT