Skip to another splice site:
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 5'  3'   		2  
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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CAACATGGTGTTGTTTGATCAAGGCACTTATGACAAGCTTCTCACTGAAGCTCCCAAGTTCAAGCTCATCACTCCATCAATCCTCTCCGACCGTATGAGGgtatacaatcttttttatctctgttgcattttttaaaaactgtatggttggtgttacttcctcatgattcaaatgttagtatctgactttgttatggtgtgaattgttaaaaatcag

Basic information

species Arabidopsis thaliana
transcript AT2G21580.2
intron # 3
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|86036273|gb|DR332026.1|DR332026
EST:     CTCCCAAGTTCAAGCTCATCACTCCATCAATCCTCTCCGACCGTATGAGG                         ATTAATGGGTCTCTTGCGAGGAGGGCGATTAGGGAGCTAATGGCAAAAGGT
genomic: CTCCCAAGTTCAAGCTCATCACTCCATCAATCCTCTCCGACCGTATGAGGgtatacaatc ... taaaaatcagATTAATGGGTCTCTTGCGAGGAGGGCGATTAGGGAGCTAATGGCAAAAGGT
EST: gi|86036254|gb|DR332007.1|DR332007
EST:     CTCCCAAGTTCAAGCTCATCACTCCATCAATCCTCTCCGACCGTATGAGG                         ATTAATGGGTCTCTTGCGAGGAGGGCGATTAGGGAGCTAATGGCAAAAGGT
genomic: CTCCCAAGTTCAAGCTCATCACTCCATCAATCCTCTCCGACCGTATGAGGgtatacaatc ... taaaaatcagATTAATGGGTCTCTTGCGAGGAGGGCGATTAGGGAGCTAATGGCAAAAGGT
EST: gi|86036287|gb|DR332040.1|DR332040
EST:     CTCCCAAGTTCAAGCTCATCACTCCATCAATCCTCTCCGACCGTATGAGG                         ATTAATGGGTCTCTTGCGAGGAGGGCGATTAGGGAGCTAATGGCAAAAGGT
genomic: CTCCCAAGTTCAAGCTCATCACTCCATCAATCCTCTCCGACCGTATGAGGgtatacaatc ... taaaaatcagATTAATGGGTCTCTTGCGAGGAGGGCGATTAGGGAGCTAATGGCAAAAGGT
EST: gi|86036277|gb|DR332030.1|DR332030
EST:     CTCCCAAGTTCAAGCTCATCACTCCATCAATCCTCTCCGACCGTATGAGG                         ATTAATGGGTCTCTTGCGAGGAGGGCGATTAGGGAGCTAATGGCAAAAGGT
genomic: CTCCCAAGTTCAAGCTCATCACTCCATCAATCCTCTCCGACCGTATGAGGgtatacaatc ... taaaaatcagATTAATGGGTCTCTTGCGAGGAGGGCGATTAGGGAGCTAATGGCAAAAGGT
EST: gi|86036278|gb|DR332031.1|DR332031
EST:     CTCCCAAGTTCAAGCTCATCACTCCATCAATCCTCTCCGACCGTATGAGG                         ATTAATGGGTCTCTTGCGAGGAGGGCGATTAGGGAGCTAATGGCAAAAGGT
genomic: CTCCCAAGTTCAAGCTCATCACTCCATCAATCCTCTCCGACCGTATGAGGgtatacaatc ... taaaaatcagATTAATGGGTCTCTTGCGAGGAGGGCGATTAGGGAGCTAATGGCAAAAGGT
EST: gi|124985063|gb|EL057678.1|EL057678
EST:     CTCCCAAGTTCAAGCTCATCACTCCATCAATCCTCTCCGACCGTATGAGG                         ATTAATGGGTCTCTTGCGAGGAGGGCGATTAGGGAGCTAA
genomic: CTCCCAAGTTCAAGCTCATCACTCCATCAATCCTCTCCGACCGTATGAGGgtatacaatc ... taaaaatcagATTAATGGGTCTCTTGCGAGGAGGGCGATTAGGGAGCTAA
EST: gi|164186355|gb|EL975796.1|EL975796
EST:     CTCCCAAGTTCAAGCTCATCACTCCATCAATCCTCTCCGACCGTATGAGG                         ATTAATGGGTCTCTTGCGAGGAGGGCGATTAGGGAGCTAATGGCAA
genomic: CTCCCAAGTTCAAGCTCATCACTCCATCAATCCTCTCCGACCGTATGAGGgtatacaatc ... taaaaatcagATTAATGGGTCTCTTGCGAGGAGGGCGATTAGGGAGCTAATGGCAA
EST: gi|86036231|gb|DR331984.1|DR331984
EST:     CTCCCAAGTTCAAGCTCATCACTCCATCAATCCTCTCCGACCGTATGAGG                         ATTAATGGGTCTCTTGCGAGGAGGGCGATTAGGGAGCTAATGGCAAAAGGT
genomic: CTCCCAAGTTCAAGCTCATCACTCCATCAATCCTCTCCGACCGTATGAGGgtatacaatc ... taaaaatcagATTAATGGGTCTCTTGCGAGGAGGGCGATTAGGGAGCTAATGGCAAAAGGT
EST: gi|86036238|gb|DR331991.1|DR331991
EST:     CTCCCAAGTTCAAGCTCATCACTCCATCAATCCTCTCCGACCGTATGAGG                         ATTAATGGGTCTCTTGCGAGGAGGGCGATTAGGGAGCTAATGGCAAAAGGT
genomic: CTCCCAAGTTCAAGCTCATCACTCCATCAATCCTCTCCGACCGTATGAGGgtatacaatc ... taaaaatcagATTAATGGGTCTCTTGCGAGGAGGGCGATTAGGGAGCTAATGGCAAAAGGT
EST: gi|86036244|gb|DR331997.1|DR331997
EST:     CTCCCAAGTTCAAGCTCATCACTCCATCAATCCTCTCCGACCGTATGAGG                         ATTAATGGGTCTCTTGCGAGGAGGGCGATTAGGGAGCTAATGGCAAAAGGT
genomic: CTCCCAAGTTCAAGCTCATCACTCCATCAATCCTCTCCGACCGTATGAGGgtatacaatc ... taaaaatcagATTAATGGGTCTCTTGCGAGGAGGGCGATTAGGGAGCTAATGGCAAAAGGT
EST: gi|164090674|gb|ES118321.1|ES118321
EST:     AATCCTCTCCGACCGTATGAGG                         ATTAATGGGCCTCTTGCGAGGAGGGCGATTAGGGAGCTAATGGCAAAAGGT
genomic: AATCCTCTCCGACCGTATGAGGgtatacaatc ... taaaaatcagATTAATGGGTCTCTTGCGAGGAGGGCGATTAGGGAGCTAATGGCAAAAGGT
EST: gi|152034092|gb|BP867368.2|BP867368
EST:     CTCCCAAGTTCAAGCTCATCACTCCATCAATCCTCTCCGACCGTATGAGG                         ATTAATGGGTCTCTTGCGAGGAGGGCGATTAGGGAGCTAATGGAAAAAGGT
genomic: CTCCCAAGTTCAAGCTCATCACTCCATCAATCCTCTCCGACCGTATGAGGgtatacaatc ... taaaaatcagATTAATGGGTCTCTTGCGAGGAGGGCGATTAGGGAGCTAATGGCAAAAGGT
EST: gi|86036295|gb|DR332048.1|DR332048
EST:     CTCCCAAGTTCAAGCTCATCACTCCATCAATCCTCTCCGACCGTATGAGG                         ATTAATGGGTCTCTTGCGAGGAGGGCGATTAGGGAGCTAATGGCAAAAGGT
genomic: CTCCCAAGTTCAAGCTCATCACTCCATCAATCCTCTCCGACCGTATGAGGgtatacaatc ... taaaaatcagATTAATGGGTCTCTTGCGAGGAGGGCGATTAGGGAGCTAATGGCAAAAGGT
EST: gi|86036284|gb|DR332037.1|DR332037
EST:     CTCCCAAGTTCAAGCTCATCACTCCATCAATCCTCTCCGACCGTATGAGG                         ATTAATGGGTCTCTTGCGAGGAGGGCGATTAGGGAGCTAATGGCAAAAGGT
genomic: CTCCCAAGTTCAAGCTCATCACTCCATCAATCCTCTCCGACCGTATGAGGgtatacaatc ... taaaaatcagATTAATGGGTCTCTTGCGAGGAGGGCGATTAGGGAGCTAATGGCAAAAGGT
EST: gi|86036251|gb|DR332004.1|DR332004
EST:     CTCCCAAGTTCAAGCTCATCACTCCATCAATCCTCTCCGACCGTATGAGG                         ATTAATGGGTCTCTTGCGAGGAGGGCGATTAGGGAGCTAATGGCAAAAGGT
genomic: CTCCCAAGTTCAAGCTCATCACTCCATCAATCCTCTCCGACCGTATGAGGgtatacaatc ... taaaaatcagATTAATGGGTCTCTTGCGAGGAGGGCGATTAGGGAGCTAATGGCAAAAGGT
EST: gi|86036226|gb|DR331979.1|DR331979
EST:     CTCCCAAGTTCAAGCTCATCACTCCATCAATCCTCTCCGACCGTATGAGG                         ATTAATGGGTCTCTTGCGAGGAGGGCGATTAGGGAGCTAATGGCAAAAGGT
genomic: CTCCCAAGTTCAAGCTCATCACTCCATCAATCCTCTCCGACCGTATGAGGgtatacaatc ... taaaaatcagATTAATGGGTCTCTTGCGAGGAGGGCGATTAGGGAGCTAATGGCAAAAGGT
EST: gi|116414979|gb|EG457571.1|EG457571
EST:     CTCCCAAGTTCAAGCTCATCACTCCATCAATCCTCTCCGACCGTATGAGG                         ATTAATGGGTCTCTTGCGAGGAGGGCGATTAGGGAGCTAATGGCAAAAGGT
genomic: CTCCCAAGTTCAAGCTCATCACTCCATCAATCCTCTCCGACCGTATGAGGgtatacaatc ... taaaaatcagATTAATGGGTCTCTTGCGAGGAGGGCGATTAGGGAGCTAATGGCAAAAGGT
EST: gi|86036270|gb|DR332023.1|DR332023
EST:     CTCCCAAGTTCAAGCTCATCACTCCATCAATCCTCTCCGACCGTATGAGG                         ATTAATGGGTCTCTTGCGAGGAGGGCGATTAGGGAGCTAATGGCAAAAGGT
genomic: CTCCCAAGTTCAAGCTCATCACTCCATCAATCCTCTCCGACCGTATGAGGgtatacaatc ... taaaaatcagATTAATGGGTCTCTTGCGAGGAGGGCGATTAGGGAGCTAATGGCAAAAGGT
EST: gi|164038728|gb|ES110889.1|ES110889
EST:     AAGTTCAAGCTCATCACTCCATCAATCCTCTCCGACCGTATGAGG                         ATTAATGGGTCTCTTGCGAGGAGGGCGATTAGGGAGCTAATGGCAAAAGGT
genomic: AAGTTCAAGCTCATCACTCCATCAATCCTCTCCGACCGTATGAGGgtatacaatc ... taaaaatcagATTAATGGGTCTCTTGCGAGGAGGGCGATTAGGGAGCTAATGGCAAAAGGT
EST: gi|86036230|gb|DR331983.1|DR331983
EST:     CTCCCAAGTTCAAGCTCATCACTCCATCAATCCTCTCCGACCGTATGAGG                         ATTAATGGGTCTCTTGCGAGGAGGGCGATTAGGGAGCTAATGGCAAAAGGT
genomic: CTCCCAAGTTCAAGCTCATCACTCCATCAATCCTCTCCGACCGTATGAGGgtatacaatc ... taaaaatcagATTAATGGGTCTCTTGCGAGGAGGGCGATTAGGGAGCTAATGGCAAAAGGT
EST: gi|86036292|gb|DR332045.1|DR332045
EST:     CTCCCAAGTTCAAGCTCATCACTCCATCAATCCTCTCCGACCGTATGAGG                         ATTAATGGGTCTCTTGCGAGGAGGGCGATTAGGGAGCTAATGGCAAAAGGT
genomic: CTCCCAAGTTCAAGCTCATCACTCCATCAATCCTCTCCGACCGTATGAGGgtatacaatc ... taaaaatcagATTAATGGGTCTCTTGCGAGGAGGGCGATTAGGGAGCTAATGGCAAAAGGT
EST: gi|86036293|gb|DR332046.1|DR332046
EST:     CTCCCAAGTTCAAGCTCATCACTCCATCAATCCTCTCCGACCGTATGAGG                         ATTAATGGGTCTCTTGCGAGGAGGGCGATTAGGGAGCTAATGGCAAAAGGT
genomic: CTCCCAAGTTCAAGCTCATCACTCCATCAATCCTCTCCGACCGTATGAGGgtatacaatc ... taaaaatcagATTAATGGGTCTCTTGCGAGGAGGGCGATTAGGGAGCTAATGGCAAAAGGT
EST: gi|125261929|gb|EL276014.1|EL276014
EST:     CTCCCAAGTTCAAGCTCATCACTCCATCAATCCTCTCCGACCGTATGAGG                         ATTAATGGGTC
genomic: CTCCCAAGTTCAAGCTCATCACTCCATCAATCCTCTCCGACCGTATGAGGgtatacaatc ... taaaaatcagATTAATGGGTC
EST: gi|86036228|gb|DR331981.1|DR331981
EST:     CTCCCAAGTTCAAGCTCATCACTCCATCAATCCTCTCCGACCGTATGAGG                         ATTAATGGGTCTCTTGCGAGGAGGGCGATTAGGGAGCTAATGGCAAAAGGT
genomic: CTCCCAAGTTCAAGCTCATCACTCCATCAATCCTCTCCGACCGTATGAGGgtatacaatc ... taaaaatcagATTAATGGGTCTCTTGCGAGGAGGGCGATTAGGGAGCTAATGGCAAAAGGT
EST: gi|86036213|gb|DR331966.1|DR331966
EST:     CTCCCAAGTTCAAGCTCATCACTCCATCAATCCTCTCCGACCGTATGAGG                         ATTAATGGGTCTCTTGCGAGGAGGGCGATTAGGGAGCTAATGGCAAAAGGT
genomic: CTCCCAAGTTCAAGCTCATCACTCCATCAATCCTCTCCGACCGTATGAGGgtatacaatc ... taaaaatcagATTAATGGGTCTCTTGCGAGGAGGGCGATTAGGGAGCTAATGGCAAAAGGT
EST: gi|86036258|gb|DR332011.1|DR332011
EST:     CTCCCAAGTTCAAGCTCATCACTCCATCAATCCTCTCCGACCGTATGAGG                         ATTAATGGGTCTCTTGCGAGGAGGGCGATTAGGGAGCTAATGGCAAAAGGT
genomic: CTCCCAAGTTCAAGCTCATCACTCCATCAATCCTCTCCGACCGTATGAGGgtatacaatc ... taaaaatcagATTAATGGGTCTCTTGCGAGGAGGGCGATTAGGGAGCTAATGGCAAAAGGT
EST: gi|86036242|gb|DR331995.1|DR331995
EST:     CTCCCAAGTTCAAGCTCATCACTCCATCAATCCTCTCCGACCGTATGAGG                         ATTAATGGGTCTCTTGCGAGGAGGGCGATTAGGGAGCTAATGGCAAAAGGT
genomic: CTCCCAAGTTCAAGCTCATCACTCCATCAATCCTCTCCGACCGTATGAGGgtatacaatc ... taaaaatcagATTAATGGGTCTCTTGCGAGGAGGGCGATTAGGGAGCTAATGGCAAAAGGT
EST: gi|86036282|gb|DR332035.1|DR332035
EST:     CTCCCAAGTTCAAGCTCATCACTCCATCAATCCTCTCCGACCGTATGAGG                         ATTAATGGGTCTCTTGCGAGGAGGGCGATTAGGGAGCTAATGGCAAAAGGT
genomic: CTCCCAAGTTCAAGCTCATCACTCCATCAATCCTCTCCGACCGTATGAGGgtatacaatc ... taaaaatcagATTAATGGGTCTCTTGCGAGGAGGGCGATTAGGGAGCTAATGGCAAAAGGT
EST: gi|86036219|gb|DR331972.1|DR331972
EST:     CTCCCAAGTTCAAGCTCATCACTCCATCAATCCTCTCCGACCGTATGAGG                         ATTAATGGGTCTCTTGCGAGGAGGGCGATTAGGGAGCTAATGGCAAAAGGT
genomic: CTCCCAAGTTCAAGCTCATCACTCCATCAATCCTCTCCGACCGTATGAGGgtatacaatc ... taaaaatcagATTAATGGGTCTCTTGCGAGGAGGGCGATTAGGGAGCTAATGGCAAAAGGT
EST: gi|86079503|gb|DR375260.1|DR375260
EST:     CTCCCAAGTTCAAGCTCATCACTCCATCAATCCTCTCCGACCGTATGAGG                         ATTAATGGGTCTCTTGCGAGGAGGGCGATTAGGGAGCTAATGGCAAAAGGT
genomic: CTCCCAAGTTCAAGCTCATCACTCCATCAATCCTCTCCGACCGTATGAGGgtatacaatc ... taaaaatcagATTAATGGGTCTCTTGCGAGGAGGGCGATTAGGGAGCTAATGGCAAAAGGT
EST: gi|124808873|gb|EH894769.1|EH894769
EST:     CTCCCAAGTTCAAGCTCATCACTCCATCAATCCTCTCCGACCGTATGAGG                         ATTAATGGGTCTCTTGCGAGGAGGGCGATTAGGGAGCTAA
genomic: CTCCCAAGTTCAAGCTCATCACTCCATCAATCCTCTCCGACCGTATGAGGgtatacaatc ... taaaaatcagATTAATGGGTCTCTTGCGAGGAGGGCGATTAGGGAGCTAA
EST: gi|86036227|gb|DR331980.1|DR331980
EST:     CTCCCAAGTTCAAGCTCATCACTCCATCAATCCTCTCCGACCGTATGAGG                         ATTAATGGGTCTCTTGCGAGGAGGGCGATTAGGGAGCTAATGGCAAAAGGT
genomic: CTCCCAAGTTCAAGCTCATCACTCCATCAATCCTCTCCGACCGTATGAGGgtatacaatc ... taaaaatcagATTAATGGGTCTCTTGCGAGGAGGGCGATTAGGGAGCTAATGGCAAAAGGT
EST: gi|125031643|gb|EL103912.1|EL103912
EST:     CTCCCAAGTTCAAGCTCATCACTCCATCAATCCTCTCCGACCGTATGAGG                         ATTAATGGGTCTCTTGCGAGG
genomic: CTCCCAAGTTCAAGCTCATCACTCCATCAATCCTCTCCGACCGTATGAGGgtatacaatc ... taaaaatcagATTAATGGGTCTCTTGCGAGG

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
CAACATGGTGTTGTTTGATCAAGGCACTTATGACAAGCTTCTCACTGAAGCTCCCAAGTTCAAGCTCATCACTCCATCAATCCTCTCCGACCGTATGAGGgtatacaatcttttttatctctgttgcattttttaaaaactgtatggttggtgttacttcctcatgattcaaatgttagtatctgactttgttatggtgtgaattgttaaaaatcag

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTCA