Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TTGATGGATTGCTTGGGAAGCATTGGAGGAATGTTGGTTTAGCCTTTAACTGCACCTTCCTTCTCTTTGGATCTGTCATTCAACTCATAGCTTGTGCCAGgtactttatataccaattctttcttcaggaaaatgagactaatgatgtagtggtttaatggtaagtgaatgtgttgttgcag

Basic information

species Arabidopsis thaliana
transcript AT2G21050.1
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT2G21050.1 (Arabidopsis thaliana), 5'ss of exon 3
lower sequence: GLYMA12G03490.1 (Glycine max), 5'ss of exon 3
TTGATGGATTGCTTGGGAAGCATTGGAGGAATGTTGGTTTAGCCTTTAACTGCACCTTCCTTCTCTTTGGATCTGTCATTCAACTCATAGCTTGTGCCAGgtactttatata--ccaattctttcttcaggaaaatgagactaatgatgt---agtggtttaatggtaagtgaatgtgttgttgcag-------------
|||||||| | || |||||||| ||||| || || ||||| |||||||||||||| || ||||| ||||||||||| || ||||| ||||||||||| |||||| |  |  |    |||           ||   |     |||   | |     | |||||  | ||    ||| | | | |  |              
TTGATGGACTCCTCGGGAAGCACTGGAGAAACGTGGGTTTGGCCTTTAACTGCACATTTCTTCTGTTTGGATCTGTTATACAACTGATAGCTTGTGCAAGgtacctactccaacttaatctgagtcctctgacccttcctttaactctttcttcattgtttatagttatactaatttatagctaaatagataaattattt

upper sequence: AT2G21050.1 (Arabidopsis thaliana), 5'ss of exon 3
lower sequence: GLYMA11G11310.1 (Glycine max), 5'ss of exon 3
TTGATGGATTGCTTGGGAAGCATTGGAGGAATGTTGGTTTAGCCTTTAACTGCACCTTCCTTCTCTTTGGATCTGTCATTCAACTCATAGCTTGTGCCAGgtactttatata--ccaattctttcttcaggaaaatgagactaatgatgt---agtggtttaatggtaagtga-----atgtgttgttgcag--------
|||||||| | || |||||||| ||||| || || ||||| |||||||||||||| || ||||| ||||||||||| || ||| | ||||||||||| |||||| |  |  |    |||           ||   |     |||   | |     | ||||| |  | ||| |     ||   || ||||          
TTGATGGACTCCTCGGGAAGCACTGGAGAAACGTGGGTTTGGCCTTTAACTGCACATTTCTTCTGTTTGGATCTGTTATACAATTGATAGCTTGTGCAAGgtacctactccaacttaatctgggtcctctgacctttcctttaactctttcttcattgtttatttattagttataattataacttattgctaaataggta

upper sequence: AT2G21050.1 (Arabidopsis thaliana), 5'ss of exon 3
lower sequence: GLYMA06G00690.1 (Glycine max), 5'ss of exon 3
TTGATGGATTGCTTGGGAAGCATTGGAGGAATGTTGGTTTAGCCTTTAACTGCACCTTCCTTCTCTTTGGATCTGTCATTCAACTCATAGCTTGTGCCAGgtactttata----taccaattctttcttcaggaaaatg-agactaatgatgtag-tggtttaatggtaagtgaatgtgttgttgcag------------
|||||||  | || |||||||| ||||| || || || || ||||| |||||||| || ||||| ||||||||||| || ||||||||||||||||| |||||   | ||    || ||||||  |  | |    |||| ||  | |  |||    |   |  ||  |   |  |  | ||  | |||            
TTGATGGGCTCCTCGGGAAGCACTGGAGAAACGTGGGCTTGGCCTTCAACTGCACATTTCTTCTATTTGGATCTGTTATCCAACTCATAGCTTGTGCAAGgtatcatctaacattatcaattcaattctaactccaatgcagtgtgagtatgagtctacatcgatccttgctctaactctttcttcagtactgtttatca

upper sequence: AT2G21050.1 (Arabidopsis thaliana), 5'ss of exon 3
lower sequence: GLYMA04G00640.1 (Glycine max), 5'ss of exon 3
TTGATGGATTGCTTGGGAAGCATTGGAGGAATGTTGGTTTAGCCTTTAACTGCACCTTCCTTCTCTTTGGATCTGTCATTCAACTCATAGCTTGTGCCAGgtactttatataccaattctttcttcaggaa-----aatgagactaatgatgtagtg--gtttaatggt--aagtgaatgtgttgttgcag---------
|||||||  | || ||||| || ||||| || || || || ||||| |||||||| || ||||| ||||||||||| || |||||||||||||| || |||||   | ||     ||||  |  | |   |       |   |||  |  |  |||    |||| |  |  | ||  |  | || |||||          
TTGATGGGCTCCTCGGGAAACACTGGAGAAACGTGGGCTTGGCCTTCAACTGCACATTTCTTCTATTTGGATCTGTTATCCAACTCATAGCTTGCGCAAGgtatcatctaacgttattcaattctaacacacccttgctctaactctttcttaagtactatttattaatttacgtttaatttttattgcacttcttattt

upper sequence: AT2G21050.1 (Arabidopsis thaliana), 5'ss of exon 3
lower sequence: Vv03s0038g02140.t01 (Vitis vinifera), 5'ss of exon 3
TTGATGGATTGCTTGGGAAGCATTGGAGGAATGTTGGTTTAGCCTTTAACTGCACCTTCCTTCTCTTTGGATCTGTCATTCAACTCATAGCTTGTGCCAGgta-ctttatataccaattctt-tcttcaggaaaatgagactaatgatgtagtggtttaatggtaagtgaatgt-gttgttgcag------------------------------------------------------------------------------------
|||||||  ||||||| || || |||||||| || || || || || |||||||| || ||||| |||||||| || |||||||||||||||||||||||| | ||   | |  |  | | | || ||     | |   |||     | |     | |     |   ||  | | ||| || |                                                                                      
TTGATGGGCTGCTTGGCAAACACTGGAGGAACGTGGGGTTGGCTTTCAACTGCACTTTTCTTCTGTTTGGATCCGTGATTCAACTCATAGCTTGTGCCAGgcatctccctctctccctccctatcctcctcctactactactctctctctctctctctctctttctctgtctcttgttttttcttcacccaccacatttttttttcctttctttacaataaacaaagatctgaggcattttctgcaactgggcatgtcgtttgttgcag

upper sequence: AT2G21050.1 (Arabidopsis thaliana), 5'ss of exon 3
lower sequence: PP1S90_46V6.1 (Physcomitrella patens), 5'ss of exon 3
TTGATGGATTGCTTGGGAAGCATTGGAGGAATGTTGGTTTAGCCTTTAACTGCACCTTCCTTCTCTTTGGATCTGTCATTCAACTCATAGCTTGTGCCAGgtactttatataccaattctt--tcttcaggaaaatgagactaatg-atgtagtggtttaatggtaagtgaatgtgttgttgcag---------------
| ||||| ||||| ||     | |||| ||  || ||| | |  || |||||||||||||||||||||||| | ||||| || ||||| || || ||||||||  |      || |  | |  || |||   |  ||| |  | |    ||     |  |   | |  |  || |  |     ||               
TGGATGGGTTGCTGGGTCGCAACTGGAAGATAGTCGGTCTTGTTTTCAACTGCACCTTCCTTCTCTTTGGAGCAGTCATCCAGCTCATTGCCTGCGCCAGgtatgtgtcgctcccaaacctaatcgtcaactatttgaaaggactatgagtcactctcgacaagcagttacatattcttaattaggtcttctagagaaag