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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTCCATTATGCCGCATGTGTGGCCCAAACACTTACCTCCGCCTTCTACCGCCATGCCTAATCCGCCGTTTTGGGTCTCCGATTCTCCCTATTGGCATCCAgtaagttcccacatttatgaaacctttactttagctctttatcatatttgttttcatcatagtatttaacattatgaaagctgaatgacaccgagtatttttatcatatgcttgtctttctaaccagcatttttgcatgtag

Basic information

species Arabidopsis thaliana
transcript AT2G20570.1
intron # 3
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|125196231|gb|EL211185.1|EL211185
EST:     GGTCTCCGATTCTCCCTATTGGCATCCA                         ATGCATAACGGGACGACTCCGTATTTACCGACCGTAGCTACG
genomic: GGTCTCCGATTCTCCCTATTGGCATCCAgtaagttccc ... ttgcatgtagATGCATAACGGGACGACTCCGTATTTACCGACCGTAGCTACG
EST: gi|125135205|gb|EL175655.1|EL175655
EST:     CCATGCCTAATCCGCCGTTTTGGGTCTCCGATTCTCCCTATTGGCATCCA                         ATGCATAACGGGACG
genomic: CCATGCCTAATCCGCCGTTTTGGGTCTCCGATTCTCCCTATTGGCATCCAgtaagttccc ... ttgcatgtagATGCATAACGGGACG
EST: gi|86088144|gb|DR383903.1|DR383903
EST:     CCATGCCTAATCCGCCGTTTTGGGTCTCCGATTCTCCCTATTGGCATCCA                         ATGCATAACGGGACGACTCCGTATTTACCGACCGTAGCTACG
genomic: CCATGCCTAATCCGCCGTTTTGGGTCTCCGATTCTCCCTATTGGCATCCAgtaagttccc ... ttgcatgtagATGCATAACGGGACGACTCCGTATTTACCGACCGTAGCTACG
EST: gi|124732852|gb|EH824254.1|EH824254
EST:     CCATGCCTAATCCGCCGTTTTGGGTCTCCGATTCTCCCTATTGGCATCCA                         ATGCATAACGTGACGACTCCGTATTTACCGACCGTAG
genomic: CCATGCCTAATCCGCCGTTTTGGGTCTCCGATTCTCCCTATTGGCATCCAgtaagttccc ... ttgcatgtagATGCATAACGGGACGACTCCGTATTTACCGACCGTAG
EST: gi|116481675|gb|EG524267.1|EG524267
EST:     CCATGCCTAATCCGCCGTTTTGGGTCTCCGATTCTCCCTATTGGCATCCA                         ATGCATAACGGGACGACTCCGTATTTACCGACCGTAGCTACG
genomic: CCATGCCTAATCCGCCGTTTTGGGTCTCCGATTCTCCCTATTGGCATCCAgtaagttccc ... ttgcatgtagATGCATAACGGGACGACTCCGTATTTACCGACCGTAGCTACG
EST: gi|125003338|gb|EL075607.1|EL075607
EST:     CATGCCTAATCCGCCGTTTTGGGTCTTCCGATTCTCCCTATTGGCATCCA                         ATGCATAACGGGACGACTCCGTATTTACCGACCGTAGCTACG
genomic: CATGCCTAATCCGCCGTTTTGGGTC-TCCGATTCTCCCTATTGGCATCCAgtaagttccc ... ttgcatgtagATGCATAACGGGACGACTCCGTATTTACCGACCGTAGCTACG
EST: gi|124784619|gb|EH874343.1|EH874343
EST:     CCATGCCTAATCCGCCGTTTTGGGTCTCCGATTCTCCCTATTGGCATCCA                         ATGCATAACGGGACGACTCCGTATTTACCGACCGTAGCTACG
genomic: CCATGCCTAATCCGCCGTTTTGGGTCTCCGATTCTCCCTATTGGCATCCAgtaagttccc ... ttgcatgtagATGCATAACGGGACGACTCCGTATTTACCGACCGTAGCTACG
EST: gi|116481664|gb|EG524256.1|EG524256
EST:     CCATGCCTAATCCGCCGTTTTGGGTCTCCGATTCTCCCTATTGGCATCCA                         ATGCATAACGGGACGACTCCGTATTTACCGACCGTAGTTACG
genomic: CCATGCCTAATCCGCCGTTTTGGGTCTCCGATTCTCCCTATTGGCATCCAgtaagttccc ... ttgcatgtagATGCATAACGGGACGACTCCGTATTTACCGACCGTAGCTACG