Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CACCACCAAGACCAAGAAGCAGAACAAGCCTAAGCTCTCTGTCAACAAGTCTATCCTCAAGAAGGAATTCCCCAGGATGTCAAAGGCTGTTGCTAACCAGgtattactcaatttttattactttagtgttttttatatgtctatggtgtgcttataggtctctatatctagttttgtgtgttattttcacggctatgatc...

Basic information

species Arabidopsis thaliana
transcript AT2G19730.3
intron # 3
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|125165363|gb|EL191679.1|EL191679
EST:     CTATCCTCAAGAAGGAATTCCCCAGGATGTCAAAGGCTGTTGCTAACCAG                         GTGGTGGACAACT-CTACAGGCCGGACTT
genomic: CTATCCTCAAGAAGGAATTCCCCAGGATGTCAAAGGCTGTTGCTAACCAGgtattactca ... aaatgtttagGTGGTGGACAACTACTACAGGCCGGACTT
EST: gi|164183129|gb|ES089551.1|ES089551
EST:     CAAAGGCTGTTGCTAACCAG                         GTGGTGGACAACTACTACAGGCCGGACTTGAAGAAAGCTGCACTTGCTAGA
genomic: CAAAGGCTGTTGCTAACCAGgtattactca ... aaatgtttagGTGGTGGACAACTACTACAGGCCGGACTTGAAGAAAGCTGCACTTGCTAGA
EST: gi|164171075|gb|ES127161.1|ES127161
EST:     CTATCCTCAAGAAGGAATTCCCCAGGATGTCAAAGGCTGTTGCTAACCAG                         GTGGTGGACAACTACTACAGGCCGGACTTGAAGAAAGCTGCACTTGC
genomic: CTATCCTCAAGAAGGAATTCCCCAGGATGTCAAAGGCTGTTGCTAACCAGgtattactca ... aaatgtttagGTGGTGGACAACTACTACAGGCCGGACTTGAAGAAAGCTGCACTTGC
EST: gi|124782177|gb|EH872120.1|EH872120
EST:     TCCCCAGGATGTCAAAGGCTGTTGCTAACCAG                         GTGGTGGACAACTACTACAGGCCGGACTTGAAGAAAGCTGCACTTGCTAGA
genomic: TCCCCAGGATGTCAAAGGCTGTTGCTAACCAGgtattactca ... aaatgtttagGTGGTGGACAACTACTACAGGCCGGACTTGAAGAAAGCTGCACTTGCTAGA
EST: gi|125020881|gb|EL093150.1|EL093150
EST:     ATGTCAAAGGCTGTTGCTAACCAG                         GTGGTGGACAACTACTACAGGCCGGACTTGAAGAAAGCTGCACTTGCTAGA
genomic: ATGTCAAAGGCTGTTGCTAACCAGgtattactca ... aaatgtttagGTGGTGGACAACTACTACAGGCCGGACTTGAAGAAAGCTGCACTTGCTAGA
EST: gi|124714749|gb|EH806151.1|EH806151
EST:     CTATCCTCAAGAAGGAATTCCCCAGGATGTCAAAGGCTGTTGCTAACCAG                         GTGGTGGACAACTACTA
genomic: CTATCCTCAAGAAGGAATTCCCCAGGATGTCAAAGGCTGTTGCTAACCAGgtattactca ... aaatgtttagGTGGTGGACAACTACTA
EST: gi|164083585|gb|ES015988.1|ES015988
EST:     CTATCCTCAAGAAGGAATTCCCCAGGATGTCAAAGGCTGTTGCTAACCAG                         GTGATGGACAACTACTA
genomic: CTATCCTCAAGAAGGAATTCCCCAGGATGTCAAAGGCTGTTGCTAACCAGgtattactca ... aaatgtttagGTGGTGGACAACTACTA
EST: gi|124993174|gb|EL065443.1|EL065443
EST:     AAGGAATTCCCCAGGATGTCAAAGGCTGTTGCTAACCAG                         GTGGTGGACAACTACTACAGGCCGGACTTGAAGAAAGCTGCACTTGCTAGA
genomic: AAGGAATTCCCCAGGATGTCAAAGGCTGTTGCTAACCAGgtattactca ... aaatgtttagGTGGTGGACAACTACTACAGGCCGGACTTGAAGAAAGCTGCACTTGCTAGA
EST: gi|86066023|gb|DR361780.1|DR361780
EST:     CTATCCTCAAGAAGGAATTCCCCAGGATGTCAAAGGCTGTTGCTAACCAG                         GTGGTGGACAACTACTACAGGCCGGACTTGAAGAAAGCTGCACTTGCTAGA
genomic: CTATCCTCAAGAAGGAATTCCCCAGGATGTCAAAGGCTGTTGCTAACCAGgtattactca ... aaatgtttagGTGGTGGACAACTACTACAGGCCGGACTTGAAGAAAGCTGCACTTGCTAGA
EST: gi|125056661|gb|EL126314.1|EL126314
EST:     GTTGCTAACCAG                         GTGGTGGACAACTACTACAGGCCGGACTTGAAGAAAGCTGCACTTGCTAGA
genomic: GTTGCTAACCAGgtattactca ... aaatgtttagGTGGTGGACAACTACTACAGGCCGGACTTGAAGAAAGCTGCACTTGCTAGA
EST: gi|86066020|gb|DR361777.1|DR361777
EST:     CTATCCTCAAGAAGGAATTCCCCAGGATGTCAAAGGCTGTTGCTAACCAG                         GTGGTGGACAACTACTACAGGCCGGACTTGAAGGAAAGCTGCACTTGCTAG
genomic: CTATCCTCAAGAAGGAATTCCCCAGGATGTCAAAGGCTGTTGCTAACCAGgtattactca ... aaatgtttagGTGGTGGACAACTACTACAGGCCGGACTTGAAG-AAAGCTGCACTTGCTAG
EST: gi|86066015|gb|DR361772.1|DR361772
EST:     CTATCCTCAAGAAGGAATTCCCCAGGATGTCAAAGGCTGTTGCTAACCAG                         GTGGTGGACAACTACTACAGGCCGGACTTGAAGAAAGCTGCACTTGCTAGA
genomic: CTATCCTCAAGAAGGAATTCCCCAGGATGTCAAAGGCTGTTGCTAACCAGgtattactca ... aaatgtttagGTGGTGGACAACTACTACAGGCCGGACTTGAAGAAAGCTGCACTTGCTAGA
EST: gi|164166157|gb|ES064996.1|ES064996
EST:     TCAAAGGCTGTTGCTAACCAG                         GTGGTGGACAACTACTACAGGCCGGACTTGAAGAAAGCTGCACTTGCTAGA
genomic: TCAAAGGCTGTTGCTAACCAGgtattactca ... aaatgtttagGTGGTGGACAACTACTACAGGCCGGACTTGAAGAAAGCTGCACTTGCTAGA
EST: gi|86066017|gb|DR361774.1|DR361774
EST:     CTATCCTCAAGAAGGAATTCCCCAGGATGTCAAAGGCTGTTGCTAACCAG                         GTGGTGGACAACTACTACAGGCCGGACTTGAAGAAAGCTGCACTTGCTAGA
genomic: CTATCCTCAAGAAGGAATTCCCCAGGATGTCAAAGGCTGTTGCTAACCAGgtattactca ... aaatgtttagGTGGTGGACAACTACTACAGGCCGGACTTGAAGAAAGCTGCACTTGCTAGA
EST: gi|86066001|gb|DR361758.1|DR361758
EST:     CTATCCTCAAGAAGGAATTCCCCAGGATGTCAAAGGCTGTTGCTAACCAG                         GTGGTGGACAACTACTACAGGCCGGACTTGAAGAAAGCTGCACTTGCTAGA
genomic: CTATCCTCAAGAAGGAATTCCCCAGGATGTCAAAGGCTGTTGCTAACCAGgtattactca ... aaatgtttagGTGGTGGACAACTACTACAGGCCGGACTTGAAGAAAGCTGCACTTGCTAGA
EST: gi|86079143|gb|DR374900.1|DR374900
EST:     CTATCCTCAAGAAGGAATTCCCCAGGATGTCMAAGGCTGTTGCTAACCAG                         GTGGTGGACAACTMCTMCAGGCCGGACTTGAAGAAMGCTGCACTTGCTAGA
genomic: CTATCCTCAAGAAGGAATTCCCCAGGATGTCAAAGGCTGTTGCTAACCAGgtattactca ... aaatgtttagGTGGTGGACAACTACTACAGGCCGGACTTGAAGAAAGCTGCACTTGCTAGA
EST: gi|116439690|gb|EG482282.1|EG482282
EST:     CTATCCTCAAGAAGGAATTCCCCAGGATGTCAAAGGCTGTTGCTAACCAG                         GTGGTGGACAACTACTACAGGCCGGACTTGAAGAAAGCTGCACTTGCTAGA
genomic: CTATCCTCAAGAAGGAATTCCCCAGGATGTCAAAGGCTGTTGCTAACCAGgtattactca ... aaatgtttagGTGGTGGACAACTACTACAGGCCGGACTTGAAGAAAGCTGCACTTGCTAGA
EST: gi|164217888|gb|ES110066.1|ES110066
EST:     CTATCCTCAAGAAGGAATTCCCCAGGATGTCAAAGGCTGTTGCTAACCAG                         GTGGTGGACAACTACTACAGGCCGGACTTGAAGAAAGCTGCACTTGC
genomic: CTATCCTCAAGAAGGAATTCCCCAGGATGTCAAAGGCTGTTGCTAACCAGgtattactca ... aaatgtttagGTGGTGGACAACTACTACAGGCCGGACTTGAAGAAAGCTGCACTTGC
EST: gi|164053386|gb|ES104086.1|ES104086
EST:     ATCCTCAAGAAGGAATTCCCCAGGATGTCAAAGGCTGTTGCTAACCAG                         GTGGTGGACAACTACTACAGGCCGGACTTGAAGAAAGCTGCACTTGCTAGA
genomic: ATCCTCAAGAAGGAATTCCCCAGGATGTCAAAGGCTGTTGCTAACCAGgtattactca ... aaatgtttagGTGGTGGACAACTACTACAGGCCGGACTTGAAGAAAGCTGCACTTGCTAGA
EST: gi|125193358|gb|EL208312.1|EL208312
EST:     CTATCCTCAAGAAGGAATTCCCCAGGATGTCAAAGGCTGTTGCTAACCAG                         GTGGTGGACAACTACTACAGGC
genomic: CTATCCTCAAGAAGGAATTCCCCAGGATGTCAAAGGCTGTTGCTAACCAGgtattactca ... aaatgtttagGTGGTGGACAACTACTACAGGC
EST: gi|164096261|gb|ES190700.1|ES190700
EST:     TTCCCCAGGATGTCAAAGGCTGTTGCTAACCAG                         GTGGTGGACAACTACTACAGGCCGGACTTGAAGAAAGCTGACACTTGCTAG
genomic: TTCCCCAGGATGTCAAAGGCTGTTGCTAACCAGgtattactca ... aaatgtttagGTGGTGGACAACTACTACAGGCCGGACTTGAAGAAAGCTG-CACTTGCTAG
EST: gi|164231827|gb|ES014429.1|ES014429
EST:     CTATCCTCAAGAAGGAATTCCCCAGGATGTCAAAGGCTGTTGCTAACCAG                         GTGGTGGACAAAACTACTACAGGCCGGAC
genomic: CTATCCTCAAGAAGGAATTCCCCAGGATGTCAAAGGCTGTTGCTAACCAGgtattactca ... aaatgtttagGTGGTGGACAA--CTACTACAGGCCGGAC
EST: gi|164102682|gb|ES046267.1|ES046267
EST:     CTATCCTCAAGAAGGAATTCCCCAGGATGTCAAAGGCTGTTGCTAACCAG                         GTGGTGGACAACTACTACAGGCCGGACTTGAAGAAAGCTGCACTTGC
genomic: CTATCCTCAAGAAGGAATTCCCCAGGATGTCAAAGGCTGTTGCTAACCAGgtattactca ... aaatgtttagGTGGTGGACAACTACTACAGGCCGGACTTGAAGAAAGCTGCACTTGC
EST: gi|164212867|gb|ES152582.1|ES152582
EST:     CTATCCTCAAGAAGGAATTCCCCAGGATGTCAAAGGCTGTTGCTAACCAG                         GTGGTGGACAACTACTACAGGCCGGACTTGAAGAAAGCTGCA
genomic: CTATCCTCAAGAAGGAATTCCCCAGGATGTCAAAGGCTGTTGCTAACCAGgtattactca ... aaatgtttagGTGGTGGACAACTACTACAGGCCGGACTTGAAGAAAGCTGCA
EST: gi|86066019|gb|DR361776.1|DR361776
EST:     CTATCCTCAAGAAGGAATTCCCCAGGATGTCAAAGGCTGTTGCTAACCAG                         GTGGTGGACAACTACTACAGGCCGGACTTGAAGAAAGCTGCACTTGCTAGA
genomic: CTATCCTCAAGAAGGAATTCCCCAGGATGTCAAAGGCTGTTGCTAACCAGgtattactca ... aaatgtttagGTGGTGGACAACTACTACAGGCCGGACTTGAAGAAAGCTGCACTTGCTAGA
EST: gi|164215323|gb|ES071576.1|ES071576
EST:     GGATGTCAAAGGCTGTTGCTAACCAG                         GTGGTGGACAACTACTACAGGCCGGACTTGAAGAAAGCTGCACTTGCTAGA
genomic: GGATGTCAAAGGCTGTTGCTAACCAGgtattactca ... aaatgtttagGTGGTGGACAACTACTACAGGCCGGACTTGAAGAAAGCTGCACTTGCTAGA
EST: gi|164055057|gb|ES144278.1|ES144278
EST:     CTATCCTCAAGAAGGAATTCCCCAGGATGTCAAAGGCTGTTGCTAACCAG                         GTGGTGGACAACTACTACAGGCCGGACTTGAAGAAAGCTGCACTTAGCTAG
genomic: CTATCCTCAAGAAGGAATTCCCCAGGATGTCAAAGGCTGTTGCTAACCAGgtattactca ... aaatgtttagGTGGTGGACAACTACTACAGGCCGGACTTGAAGAAAGCTGCACTT-GCTAG
EST: gi|163994940|gb|ES157390.1|ES157390
EST:     CTATCCTCAAGAAGGAATTCCCCAGGATGTCAAAGGCTGTTGCTAACCAG                         GTGGTGGACAACTACTACAGGCCGGACTTGAA
genomic: CTATCCTCAAGAAGGAATTCCCCAGGATGTCAAAGGCTGTTGCTAACCAGgtattactca ... aaatgtttagGTGGTGGACAACTACTACAGGCCGGACTTGAA
EST: gi|125091840|gb|EL149663.1|EL149663
EST:     CCCCAGGATGTCAAAGGCTGTTGCTAACCAG                         GTGGTGGACAACTACTACAGGCCGGACTTGAAGAAAGCTGCACTTGCTAGA
genomic: CCCCAGGATGTCAAAGGCTGTTGCTAACCAGgtattactca ... aaatgtttagGTGGTGGACAACTACTACAGGCCGGACTTGAAGAAAGCTGCACTTGCTAGA
EST: gi|163992433|gb|ES117342.1|ES117342
EST:     CCAGGATGTCAAAGGCTGTTGCTAACCAG                         GTGGTGGACAACTACTACAGGCCGGACTTGA-GAAAGCTGCACTTGCTAGA
genomic: CCAGGATGTCAAAGGCTGTTGCTAACCAGgtattactca ... aaatgtttagGTGGTGGACAACTACTACAGGCCGGACTTGAAGAAAGCTGCACTTGCTAGA
EST: gi|116452423|gb|EG495015.1|EG495015
EST:     CTATCCTCAAGAAGGAATTCCCCAGGATGTCAAAGGCTGTTGCTAACCAG                         GTGGTGGACAACTACTACAGGCCGGACTTGAAGAAAGCTGCACTTGCTAGA
genomic: CTATCCTCAAGAAGGAATTCCCCAGGATGTCAAAGGCTGTTGCTAACCAGgtattactca ... aaatgtttagGTGGTGGACAACTACTACAGGCCGGACTTGAAGAAAGCTGCACTTGCTAGA
EST: gi|86066018|gb|DR361775.1|DR361775
EST:     CTATCCTCAAGAAGGAATTCCCCAGGATGTCAAAGGCTGTTGCTAACCAG                         GTGGTGGACAACTACTACAGGCCGGACTTGAAGAAAGCTGCACTTGCTAGA
genomic: CTATCCTCAAGAAGGAATTCCCCAGGATGTCAAAGGCTGTTGCTAACCAGgtattactca ... aaatgtttagGTGGTGGACAACTACTACAGGCCGGACTTGAAGAAAGCTGCACTTGCTAGA
EST: gi|47830640|gb|CK120324.1|CK120324
EST:     CTATCCTCAAGAAGGAATTCCCCAGGATGTCAAAGGCTGTTGCTAACCAG                         GTGGTGGACAACTACTACAGGCCGGACTTGAAGAAAGCTGCACTTGCTAGA
genomic: CTATCCTCAAGAAGGAATTCCCCAGGATGTCAAAGGCTGTTGCTAACCAGgtattactca ... aaatgtttagGTGGTGGACAACTACTACAGGCCGGACTTGAAGAAAGCTGCACTTGCTAGA
EST: gi|124938658|gb|EL015266.1|EL015266
EST:     AAGGAATTCCCCAGGATGTCAAAGGCTGTTGCTAACCAG                         GTGGTGGACAACTACTACAGGCCGGACTTGAAGAAAGCTGCACTTGCTAGA
genomic: AAGGAATTCCCCAGGATGTCAAAGGCTGTTGCTAACCAGgtattactca ... aaatgtttagGTGGTGGACAACTACTACAGGCCGGACTTGAAGAAAGCTGCACTTGCTAGA
EST: gi|86066025|gb|DR361782.1|DR361782
EST:     CTATCCTCAAGAAGGAATTCCCCAGGATGTCAAAGGCTGTTGCTAACCAG                         GTGGTGGACAACTACTACAGGCCGGACTTGAAGAAAGCTACACTTGCTAGA
genomic: CTATCCTCAAGAAGGAATTCCCCAGGATGTCAAAGGCTGTTGCTAACCAGgtattactca ... aaatgtttagGTGGTGGACAACTACTACAGGCCGGACTTGAAGAAAGCTGCACTTGCTAGA
EST: gi|86066021|gb|DR361778.1|DR361778
EST:     CTATCCTCAAGAAGGAATTCCCCAGGATGTCAAAGGCTGTTGCTAACCAG                         GTGGTGGACAACTACTACAGGCCGGACTTGAAGAAAGCTGCACTTGCTAGA
genomic: CTATCCTCAAGAAGGAATTCCCCAGGATGTCAAAGGCTGTTGCTAACCAGgtattactca ... aaatgtttagGTGGTGGACAACTACTACAGGCCGGACTTGAAGAAAGCTGCACTTGCTAGA
EST: gi|125224405|gb|EL238490.1|EL238490
EST:     CTGTTGCTAACCAG                         GTGGTGGACAACTACTACAGGCCGGACTTGAAGAAAGCTGCACTTGCTAGA
genomic: CTGTTGCTAACCAGgtattactca ... aaatgtttagGTGGTGGACAACTACTACAGGCCGGACTTGAAGAAAGCTGCACTTGCTAGA
EST: gi|164098198|gb|ES185614.1|ES185614
EST:     TCCTCAAGAAGGAATTCCCCAGGATGTCAAAGGCTGTTGCTAACCAG                         GTGGTGGACAACTACTACAGGCCGGACTTGAAGAAAGCTGCACTTGCTAGA
genomic: TCCTCAAGAAGGAATTCCCCAGGATGTCAAAGGCTGTTGCTAACCAGgtattactca ... aaatgtttagGTGGTGGACAACTACTACAGGCCGGACTTGAAGAAAGCTGCACTTGCTAGA
EST: gi|124823121|gb|EH907987.1|EH907987
EST:     ATCCTCAAGAAGGAATTCCCCTTAGGATGTCAAAGGCTGTTGCTAACCAG                         GTGGTGGACAACTACTACAGGCCGGACTTGAAGAAAGCTGCACTTG
genomic: ATCCTCAAGAAGGAATTCCCC--AGGATGTCAAAGGCTGTTGCTAACCAGgtattactca ... aaatgtttagGTGGTGGACAACTACTACAGGCCGGACTTGAAGAAAGCTGCACTTG
EST: gi|164182440|gb|ES113955.1|ES113955
EST:     CTATCCTCAAGAAGGAATTCCCCAGGATGTCAAAGGCTGTTGCTAACCAG                         GTGGTGGACAACTACTACAGGCCGGACTTGAAGAAAGCTGCACTTGCTAG
genomic: CTATCCTCAAGAAGGAATTCCCCAGGATGTCAAAGGCTGTTGCTAACCAGgtattactca ... aaatgtttagGTGGTGGACAACTACTACAGGCCGGACTTGAAGAAAGCTGCACTTGCTAG

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
CACCACCAAGACCAAGAAGCAGAACAAGCCTAAGCTCTCTGTCAACAAGTCTATCCTCAAGAAGGAATTCCCCAGGATGTCAAAGGCTGTTGCTAACCAGgtattactcaatttttattactttagtgttttttatatgtctatggtgtgcttataggtctctatatctagttttgtgtgttattttcacggctatgatc

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AAGGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AGGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GCTGTT