Sequence
atgc intronic sequence ATGC exonic sequenceTATGATTCTTGGGATGCTCTTTGAGGAAGGATCATACAAAAAGCTTTACAGCTATAAACACCTTATAAATGGATTTGCAGCTCATGTTTCTCCTGAGCAGgtgaaaaatcgatttcagatcatttctaaatagttcttaactttcatgttcccttacactatttcactatatttggtag
Basic information
species | Arabidopsis thaliana |
transcript | AT2G19170.1 |
intron # | 3 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: AT2G19170.1 (Arabidopsis thaliana), 5'ss of exon 3
lower sequence: GLYMA09G06640.1 (Glycine max), 5'ss of exon 3
TATGATTCTTGGGATGCTCTTTGAGGAAGGATCATACAAAAAGCTTTACAGCTATAAACACCTTATAAATGGATTTGCAGCTCATGTTTCTCCTGAGCAGgtgaaaaatcgatttcagatcatttctaaatagttcttaactttcatgttcccttacactatttcactatatttg-gtag---------------------
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CATGCTTCTGGGTTTGCTGTTTGAGCGTGGGACATACAACAAGCTCTATAGCTATAGACACCTTATAAATGGGTTTGCAGTTCATCTTTCCCCAGAACAGgtgatgtcttgggttgttatc-tttttagtttgtactatgatttgattaagagtttaatgattatgcactaatagtgtaaaacaatgtcatccaatcataa
upper sequence: AT2G19170.1 (Arabidopsis thaliana), 5'ss of exon 3
lower sequence: GLYMA15G17830.1 (Glycine max), 5'ss of exon 2
TATGATTCTTGGGATGCTCTTTGAGGAAGGATCATACAAAAAGCTTTACAGCTATAAACACCTTATAAATGGATTTGCAGCTCATGTTTCTCCTGAGCAGgtgaaaaatcgatttcagatcatttctaaatagttcttaactttcatgttcccttacactatttcactatatttggtag-----------------------------------
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CATGCTTCTGGGGATGCTGTTTGAGCGTGGGACATACAACAAGCTCTATAGCTATAGACACCTTATAAATGGGTTTGCAGTTCATCTTTCCCCAGAACAGgtgatgtctcgtattgttatc-tttttagtttttactgtgatttcgtttaataatagtatgttttgttgtttttgaacttcatgtaagcatgttttgtcctcttatattagtagMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|116428845|gb|EG471437.1|EG471437EST: GCTATAAACACCTTATAAATGGATTTGCAGCTCATGTTTCTCCTGAGCAG GCAGAAACACTTCGTCGCGCCCCTGGTGTGAGATCTGTAGACAAAGATTGG
genomic: GCTATAAACACCTTATAAATGGATTTGCAGCTCATGTTTCTCCTGAGCAGgtgaaaaatc ... tatttggtagGCAGAAACACTTCGTCGCGCCCCTGGTGTGAGATCTGTAGACAAAGATTGG
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
TATGATTCTTGGGATGCTCTTTGAGGAAGGATCATACAAAAAGCTTTACAGCTATAAACACCTTATAAATGGATTTGCAGCTCATGTTTCTCCTGAGCAGgtgaaaaatcgatttcagatcatttctaaatagttcttaactttcatgttcccttacactatttcactatatttggtag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCAG