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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGTAATTGTGGAAGCCTTGAAGATGGATAGTTTACAGAGGCTTTGTTCTTCTTTGGAACCGATTCTTCGCCGAGTGgttagcttaataagaattgtttacatgtcttttggtgctttgtgttgtttctttggcttactgatttgttttgtgagcattgtcaaacag

Basic information

species Arabidopsis thaliana
transcript AT2G18750.1
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT2G18750.1 (Arabidopsis thaliana), 5'ss of exon 3
lower sequence: GLYMA17G07290.1 (Glycine max), 5'ss of exon 4
TGTAATTGTGGAAGCCTTGAAGATGGATAGTTTACAGAGGCTTTGTTCTTCTTTGGAACCGATTCTTCGCCGAGTGgt----tagcttaataagaattgtttacatgtcttttggtgctttgtg-ttgtttctttggcttactgatttgttt--tgtgagcattgt-caaacag--
|||||||||||||||  ||||| |||| ||||| |||| |||||| || ||||| ||||| ||||||||  |||| ||     || |   |    | |  || |      |||  |||| | |  || | | |||| | | || |||| |||  |||| |   | | ||  |    
TGTAATTGTGGAAGCTCTGAAGGTGGACAGTTTGCAGAAGCTTTGCTCATCTTTAGAACCCATTCTTCGTAGAGTTgtaagacagttggcttgacactactttctcactattttctgctatatacttttctttttgacatgcttatttttttggtgtgggggctatgcattctacg

upper sequence: AT2G18750.1 (Arabidopsis thaliana), 5'ss of exon 3
lower sequence: GLYMA13G01160.1 (Glycine max), 5'ss of exon 3
TGTAATTGTGGAAGCCTTGAAGATGGATAGTTTACAGAGGCTTTGTTCTTCTTTGGAACCGATTCTTCGCCGAGTGgt--------tagcttaataagaattgtttacatgtcttttggtgctttgtgt---tgtttctttggcttactgatttgtt-ttgtgagcattgtcaaacag
|||||||||||||||  | ||| |||| ||||| |||| |||||| || ||||| ||||| ||||||||  |||| ||        | |||| | |  | ||  |   || |  |||  |  ||    |   | | | ||||| ||   ||  ||   || ||     |   ||    
TGTAATTGTGGAAGCTCTCAAGGTGGACAGTTTGCAGAAGCTTTGCTCATCTTTAGAACCCATTCTTCGTAGAGTTgtaagacatttggcttcacactattttctgctatatacttttctttttgacatgcttatctttttggtttggggaactggggttatgcattctacaaagt--
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|164229711|gb|ES160746.1|ES160746
EST:     ATAGTTTACAGAGGCTTTGTTCTTCTTTGGAACCGATTCTTCGCCGAGTG                         GTAAGTGAAGAGGTGG
genomic: ATAGTTTACAGAGGCTTTGTTCTTCTTTGGAACCGATTCTTCGCCGAGTGgttagcttaa ... tgtcaaacagGTAAGTGAAGAGGTGG