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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CGGTATCTTGTTTCTTTGGTTGGATATTGCATAGCTGATGGACAGAGGATGTTGGTTTATGAGTTTGTTCCTAACAAAACTTTGGAATATCATCTTCATGgttagaccacttaaaaactttgagtactaagtttattttctctaatctatatattcaagaaagttgtaaccttaatttgttgttgtag

Basic information

species Arabidopsis thaliana
transcript AT2G18470.1
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT2G18470.1 (Arabidopsis thaliana), 5'ss of exon 3
lower sequence: Vv04s0023g01570.t01 (Vitis vinifera), 5'ss of exon 2
CGGTATCTTGTTTCTTTGGTTGGATATTGCATAGCTGATGGACAGAGGATGTTGGTTTATGAGTTTGTTCCTAACAAAACTTTGGAATATCATCTTCATGgttag--accacttaaaaactttgagtactaagtttattttctct------------aatct-atatattcaagaaagttgtaaccttaatttgttgttgtag----------------------------------------------------------
    ||||||| ||  | || ||||||||||| |||||||| ||| |||||||||||||||| |||||||  |||||||| |||||| | || ||||||||| ||     |  | |     | |  |||| |  |||   |   |            || || || ||| ||  | || |||    |  | |     |||                                                             
----ATCTTGTGTCACTTGTGGGATATTGCATTGCTGATGGGCAGCGGATGTTGGTTTATGAATTTGTTCACAACAAAACATTGGAACACCACCTTCATGGTAAgttgtgagctcatggactagcttactgacattaccctgcttctatataaaacaaacctcatttatacagaatagatgtcctttccaatgagcattgctttctaacagtcaatttttttcctaatcatttcaattatcaaaatttcagttgcaggaag